View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11902_low_43 (Length: 238)

Name: NF11902_low_43
Description: NF11902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11902_low_43
NF11902_low_43
[»] chr3 (1 HSPs)
chr3 (1-238)||(513796-514033)
[»] chr4 (3 HSPs)
chr4 (137-231)||(371332-371418)
chr4 (132-238)||(21833556-21833662)
chr4 (129-169)||(532590-532630)
[»] chr8 (2 HSPs)
chr8 (132-238)||(18314886-18314992)
chr8 (132-178)||(32151729-32151775)
[»] chr1 (2 HSPs)
chr1 (130-176)||(9587021-9587067)
chr1 (144-209)||(7554925-7554990)
[»] chr6 (1 HSPs)
chr6 (132-169)||(6588531-6588568)
[»] chr5 (1 HSPs)
chr5 (130-175)||(28532574-28532619)
[»] chr2 (1 HSPs)
chr2 (132-169)||(32785316-32785353)


Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 513796 - 514033
Alignment:
Q  1 ttgaagaactcgacctcagtggcccttgcttttgcagtgacttaattgatggtgatgggataaaggctctttcagactcacttttccaactccgcaagat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  513796 ttgaagaactcgacctcagtggcccttgcttttgcagtgacttaattgatggtgatgggataaaggctctttcagactcacttttccaactccgcaagat 513895  T
Q  101 tgatctctctcttcatagtcacttggatgaccaatcgcttttccacttgttcaaaaactgtaagcttcttcaagaggttatcatctttaattgcgatcgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  513896 tgatctctctcttcatagtcacttggatgaccaatcgcttttccacttgttcaaaaactgtaagcttcttcaagaggttatcatctttaattgcgatcgc 513995  T
Q  201 ataaccaaacaaggtattgcttctgctctccgtgagag 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  513996 ataaccaaacaaggtattgcttctgctctccgtgagag 514033  T

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Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 137 - 231
Target Start/End: Complemental strand, 371418 - 371332
Alignment:
Q  137 gcttttccacttgttcaaaaactgtaagcttcttcaagaggttatcatctttaattgcgatcgcataaccaaacaaggtattgcttctgctctcc 231  Q
    |||||||||||||||||||||||||||||        |||||||||||||||||| || ||| ||||||||| ||||||||||||||||||||||    
T  371418 gcttttccacttgttcaaaaactgtaagc--------gaggttatcatctttaatagctatcacataaccaatcaaggtattgcttctgctctcc 371332  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 238
Target Start/End: Original strand, 21833556 - 21833662
Alignment:
Q  132 caatcgcttttccacttgttcaaaaactgtaagcttcttcaagaggttatcatctttaattgcgatcgcataaccaaacaaggtattgcttctgctctcc 231  Q
    ||||| |||||||||||| | || || |||||||||||| ||||||| ||||| ||| |||| ||||  |||| || | |||| |||||||| |||||||    
T  21833556 caatctcttttccacttgctaaagaattgtaagcttcttgaagaggtcatcatgtttgattgtgatcaaataagcagagaaggcattgcttcagctctcc 21833655  T
Q  232 gtgagag 238  Q
    |||||||    
T  21833656 gtgagag 21833662  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 532630 - 532590
Alignment:
Q  129 gaccaatcgcttttccacttgttcaaaaactgtaagcttct 169  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  532630 gaccaatcgcttttccacttgttcaaaaattgtaagcttct 532590  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 238
Target Start/End: Original strand, 18314886 - 18314992
Alignment:
Q  132 caatcgcttttccacttgttcaaaaactgtaagcttcttcaagaggttatcatctttaattgcgatcgcataaccaaacaaggtattgcttctgctctcc 231  Q
    ||||||||||||||||||||||| ||||||||||||||  |||||   ||||| ||| | ||  |||  ||||||||    |||||||||| ||||||||    
T  18314886 caatcgcttttccacttgttcaagaactgtaagcttctcgaagagacaatcatattttactgtcatcaaataaccaacgcgggtattgcttttgctctcc 18314985  T
Q  232 gtgagag 238  Q
    |||||||    
T  18314986 gtgagag 18314992  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 32151775 - 32151729
Alignment:
Q  132 caatcgcttttccacttgttcaaaaactgtaagcttcttcaagaggt 178  Q
    ||||||||||||||||||||||| ||||| ||||||||  |||||||    
T  32151775 caatcgcttttccacttgttcaacaactggaagcttctcgaagaggt 32151729  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 9587067 - 9587021
Alignment:
Q  130 accaatcgcttttccacttgttcaaaaactgtaagcttcttcaagag 176  Q
    |||||||||||||||||||||||||||| ||||| |||||| |||||    
T  9587067 accaatcgcttttccacttgttcaaaaattgtaatcttcttgaagag 9587021  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 209
Target Start/End: Complemental strand, 7554990 - 7554925
Alignment:
Q  144 cacttgttcaaaaactgtaagcttcttcaagaggttatcatctttaattgcgatcgcataaccaaa 209  Q
    |||||||| || ||||| |||||||| |||||||||||||| ||| | || ||| |||||||||||    
T  7554990 cacttgtttaagaactgcaagcttctccaagaggttatcatgtttgagtgtgatggcataaccaaa 7554925  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 6588531 - 6588568
Alignment:
Q  132 caatcgcttttccacttgttcaaaaactgtaagcttct 169  Q
    ||||||||||||||||||||||| || |||||||||||    
T  6588531 caatcgcttttccacttgttcaacaattgtaagcttct 6588568  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 175
Target Start/End: Complemental strand, 28532619 - 28532574
Alignment:
Q  130 accaatcgcttttccacttgttcaaaaactgtaagcttcttcaaga 175  Q
    ||||||| ||||||||||||||||  |||||||||||||| |||||    
T  28532619 accaatcacttttccacttgttcagcaactgtaagcttctccaaga 28532574  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 32785316 - 32785353
Alignment:
Q  132 caatcgcttttccacttgttcaaaaactgtaagcttct 169  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  32785316 caatcgcttttccacttgttcaaaaacttgaagcttct 32785353  T

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