View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11902_low_46 (Length: 229)
Name: NF11902_low_46
Description: NF11902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11902_low_46 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 49929632 - 49929404
Alignment:
| Q |
1 |
tcacctgaagtagtgatcaaattttactcattttaaattgcagcaatttcacaattactgtaacataaggaatgctacatacctattgaaccttaggctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
49929632 |
tcacctgaagtagtgatcaaattttactcattttaaattgcagcaatttcacaattactgtaacataaggaatgctacatacctattgtaccttaggctt |
49929533 |
T |
|
| Q |
101 |
ttaatttatgttttcaagctacatcattagcccatgtttagattaatcatcttcgctcctacgctttgaggttcgaacagaatcacatgtattgtgacaa |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49929532 |
ttaatttatgttttcaagctacatcgttagcccatgtttaaattaatcatcttcgctcctacgctttgaggttcgaacagaatcacatgtattgtgacaa |
49929433 |
T |
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| Q |
201 |
attcaaaatgaaaggtaaataatccttta |
229 |
Q |
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|||||||||||||||||||||||| |||| |
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| T |
49929432 |
attcaaaatgaaaggtaaataatctttta |
49929404 |
T |
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