View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11902_low_48 (Length: 207)

Name: NF11902_low_48
Description: NF11902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11902_low_48
NF11902_low_48
[»] chr8 (3 HSPs)
chr8 (16-207)||(15348876-15349067)
chr8 (19-120)||(12195323-12195424)
chr8 (19-120)||(12439751-12439852)
[»] chr4 (8 HSPs)
chr4 (80-207)||(48898794-48898921)
chr4 (19-120)||(48891435-48891536)
chr4 (20-120)||(48852690-48852790)
chr4 (19-106)||(48170533-48170620)
chr4 (79-120)||(49048530-49048571)
chr4 (179-207)||(48705253-48705281)
chr4 (179-207)||(48870713-48870741)
chr4 (179-207)||(48886399-48886427)


Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 15348876 - 15349067
Alignment:
Q  16 aaaagatgattacttggtggttttaatgtcctatgatcccaccttagataatatttattcgtgtttggagtttttctcgttgagagataatgtgtggaag 115  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15348876 aaaagatgattacttggtggttttaatgtcctatgatcccgccttagataatatttattcgtgtttggagtttttctcgttgagagataatgtgtggaag 15348975  T
Q  116 gaaatggactgcccttattgcccttataggagtaattttgatgagatgcccaaagcagggtgtctctataatggggctattcattggttggc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15348976 gaaatggactgcccttattgcccttataggagtaattttgatgagatgcccaaagcagggtgtctctataatggggctattcattggttggc 15349067  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 12195323 - 12195424
Alignment:
Q  19 agatgattacttggtggttttaatgtcctatgatcccaccttagataatatttattcgtgtttggagtttttctcgttgagagataatgtgtggaaggaa 118  Q
    ||||||||||||||| |||||| ||||||||||||| |||||||  || | ||  |||| ||| || |||||||| ||||||||||||  |||||| |||    
T  12195323 agatgattacttggtcgttttattgtcctatgatccaaccttagtgaaaacttcatcgtatttagaatttttctcattgagagataataagtggaatgaa 12195422  T
Q  119 at 120  Q
    ||    
T  12195423 at 12195424  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 12439751 - 12439852
Alignment:
Q  19 agatgattacttggtggttttaatgtcctatgatcccaccttagataatatttattcgtgtttggagtttttctcgttgagagataatgtgtggaaggaa 118  Q
    ||||||||||||||| |||||| ||||||||||||| |||||||  || | ||  |||| ||| || |||||||| ||||||||||||  |||||| |||    
T  12439751 agatgattacttggtcgttttattgtcctatgatccaaccttagtgaaaacttcatcgtatttagaatttttctcattgagagataataagtggaatgaa 12439850  T
Q  119 at 120  Q
    ||    
T  12439851 at 12439852  T

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Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 80 - 207
Target Start/End: Original strand, 48898794 - 48898921
Alignment:
Q  80 ttggagtttttctcgttgagagataatgtgtggaaggaaatggactgcccttattgcccttataggagtaattttgatgagatgcccaaagcagggtgtc 179  Q
    |||||||||||||| |||||||||||||||||||||||||| || ||| || | ||||||||||  ||||  ||| |||| |  ||| | |||||||  |    
T  48898794 ttggagtttttctcattgagagataatgtgtggaaggaaattgagtgcactcaatgcccttatacaagtacctttaatgataatccccatgcagggtcac 48898893  T
Q  180 tctataatggggctattcattggttggc 207  Q
    ||||||||||||||||||||||||||||    
T  48898894 tctataatggggctattcattggttggc 48898921  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 48891435 - 48891536
Alignment:
Q  19 agatgattacttggtggttttaatgtcctatgatcccaccttagataatatttattcgtgtttggagtttttctcgttgagagataatgtgtggaaggaa 118  Q
    ||||||||| |||||||||| | ||||||||||| | |||||||||  || | || || |||||||||||||||| |||||||||||| ||||||| |||    
T  48891435 agatgattagttggtggtttcagtgtcctatgatacaaccttagatggtaatcatccgcgtttggagtttttctcattgagagataatatgtggaaagaa 48891534  T
Q  119 at 120  Q
    ||    
T  48891535 at 48891536  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 48852690 - 48852790
Alignment:
Q  20 gatgattacttggtggttttaatgtcctatgatcccaccttagataatatttattcgtgtttggagtttttctcgttgagagataatgtgtggaaggaaa 119  Q
    |||||||||||||| |||||||||||||||||| | ||||||| |||| |||  ||   ||| ||||||||||| ||||||| |||||  ||||| ||||    
T  48852690 gatgattacttggtagttttaatgtcctatgatacaaccttagctaatgtttcatcacatttagagtttttctcattgagagctaatgcatggaaagaaa 48852789  T
Q  120 t 120  Q
    |    
T  48852790 t 48852790  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 48170620 - 48170533
Alignment:
Q  19 agatgattacttggtggttttaatgtcctatgatcccaccttagataatatttattcgtgtttggagtttttctcgttgagagataat 106  Q
    |||||||||||| ||||||| | |||||| |||||| ||||||| | ||  ||||||| ||||||| |||||||| || |||||||||    
T  48170620 agatgattacttagtggtttcagtgtcctgtgatccaaccttagttcattgttattcgcgtttggaatttttctcattaagagataat 48170533  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 49048571 - 49048530
Alignment:
Q  79 tttggagtttttctcgttgagagataatgtgtggaaggaaat 120  Q
    |||||||||||||||||||||||||||| | ||||| |||||    
T  49048571 tttggagtttttctcgttgagagataatatatggaaagaaat 49048530  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 207
Target Start/End: Complemental strand, 48705281 - 48705253
Alignment:
Q  179 ctctataatggggctattcattggttggc 207  Q
    |||||||||||||||||||||||||||||    
T  48705281 ctctataatggggctattcattggttggc 48705253  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 207
Target Start/End: Original strand, 48870713 - 48870741
Alignment:
Q  179 ctctataatggggctattcattggttggc 207  Q
    |||||||||||||||||||||||||||||    
T  48870713 ctctataatggggctattcattggttggc 48870741  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 207
Target Start/End: Original strand, 48886399 - 48886427
Alignment:
Q  179 ctctataatggggctattcattggttggc 207  Q
    |||||||||||||||||||||||||||||    
T  48886399 ctctataatggggctattcattggttggc 48886427  T

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