View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11902_low_49 (Length: 202)

Name: NF11902_low_49
Description: NF11902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11902_low_49
NF11902_low_49
[»] chr6 (5 HSPs)
chr6 (20-187)||(12897934-12898101)
chr6 (28-187)||(12905564-12905723)
chr6 (28-185)||(12956455-12956612)
chr6 (28-185)||(12947018-12947175)
chr6 (28-150)||(12930653-12930775)
[»] chr2 (1 HSPs)
chr2 (28-185)||(17925081-17925238)
[»] chr5 (7 HSPs)
chr5 (28-81)||(10764876-10764929)
chr5 (28-77)||(10748798-10748847)
chr5 (23-79)||(10610082-10610138)
chr5 (110-152)||(10557379-10557421)
chr5 (28-82)||(10718676-10718730)
chr5 (47-152)||(10218434-10218539)
chr5 (111-152)||(10603213-10603254)


Alignment Details
Target: chr6 (Bit Score: 168; Significance: 3e-90; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 20 - 187
Target Start/End: Original strand, 12897934 - 12898101
Alignment:
Q  20 tgagtgtcaacaatttgtccggtaagattccttcttgtctttataatatctcatcacttattacactttcggcaacacaaaataacttgcatggctcttt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12897934 tgagtgtcaacaatttgtccggtaagattccttcttgtctttataatatctcatcacttattacactttcggcaacacaaaataacttgcatggctcttt 12898033  T
Q  120 tccacccaacatgttccacaccctccccaatcttaaatttttacattttggaggaaatcaattctctg 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12898034 tccacccaacatgttccacaccctccccaatcttaaatttttacattttggaggaaatcaattctctg 12898101  T

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Target: chr6; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 28 - 187
Target Start/End: Original strand, 12905564 - 12905723
Alignment:
Q  28 aacaatttgtccggtaagattccttcttgtctttataatatctcatcacttattacactttcggcaacacaaaataacttgcatggctcttttccaccca 127  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||    | ||||||||||||||||||||||||||||||    
T  12905564 aacaatttgtccggtaagataccttcttgtctttataatatctcatcacttattacccttgcggtggaagaaaataacttgcatggctcttttccaccca 12905663  T
Q  128 acatgttccacaccctccccaatcttaaatttttacattttggaggaaatcaattctctg 187  Q
    ||||||||||||||||||||||||||||||| |||||||||| |  ||||||||||||||    
T  12905664 acatgttccacaccctccccaatcttaaattattacattttgcatcaaatcaattctctg 12905723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 28 - 185
Target Start/End: Original strand, 12956455 - 12956612
Alignment:
Q  28 aacaatttgtccggtaagattccttcttgtctttataatatctcatcacttattacactttcggcaacacaaaataacttgcatggctcttttccaccca 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||| ||||||||||||| | |||||||||||||||||||    
T  12956455 aacaatttgtccggtaagattccttcttgtctttataatatctcatcacttattgcccttgcggtaacacaaaataaccttcatggctcttttccaccca 12956554  T
Q  128 acatgttccacaccctccccaatcttaaatttttacattttggaggaaatcaattctc 185  Q
    |||||||||||||||||||||||||| || | ||  |||||| || ||||||||||||    
T  12956555 acatgttccacaccctccccaatcttcaaatattcgattttgcagcaaatcaattctc 12956612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 28 - 185
Target Start/End: Original strand, 12947018 - 12947175
Alignment:
Q  28 aacaatttgtccggtaagattccttcttgtctttataatatctcatcacttattacactttcggcaacacaaaataacttgcatggctcttttccaccca 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||| |||||  ||| || | |||||||||||| ||||||    
T  12947018 aacaatttgtccggtaagattccttcttgtctttataatatctcatcacttattgtcctttcggtaacactgaatcaccttcatggctcttttgcaccca 12947117  T
Q  128 acatgttccacaccctccccaatcttaaatttttacattttggaggaaatcaattctc 185  Q
    |||||||||||||||||||||||||| || | ||  ||||||||| ||||||||||||    
T  12947118 acatgttccacaccctccccaatcttgaactattctattttggagcaaatcaattctc 12947175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 28 - 150
Target Start/End: Original strand, 12930653 - 12930775
Alignment:
Q  28 aacaatttgtccggtaagattccttcttgtctttataatatctcatcacttattacactttcggcaacacaaaataacttgcatggctcttttccaccca 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||| |||||| ||| || | |||||||||||||||||||    
T  12930653 aacaatttgtccggtaagattccttcttgtctttataatatctcatcacttatttcccttacggtaacacagaatcaccttcatggctcttttccaccca 12930752  T
Q  128 acatgttccacaccctccccaat 150  Q
    |||||||||||||||||||||||    
T  12930753 acatgttccacaccctccccaat 12930775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 6e-39; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 28 - 185
Target Start/End: Complemental strand, 17925238 - 17925081
Alignment:
Q  28 aacaatttgtccggtaagattccttcttgtctttataatatctcatcacttattacactttcggcaacacaaaataacttgcatggctcttttccaccca 127  Q
    |||||||| |||||||||||||| |||||||||||||| ||||||||||||||| | ||| |||    |||||||||||| |  ||||||||||||||||    
T  17925238 aacaatttttccggtaagattccatcttgtctttataacatctcatcacttatttcccttgcggtggaacaaaataactttctcggctcttttccaccca 17925139  T
Q  128 acatgttccacaccctccccaatcttaaatttttacattttggaggaaatcaattctc 185  Q
    |||| |||||||||||||||||||||||| | ||  |||||| |||||||||||||||    
T  17925138 acatcttccacaccctccccaatcttaaaatatttgattttgcaggaaatcaattctc 17925081  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 10764929 - 10764876
Alignment:
Q  28 aacaatttgtccggtaagattccttcttgtctttataatatctcatcacttatt 81  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  10764929 aacaatttgtctggtaagattccatcttgtctttataatatctcatcacttatt 10764876  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 10748847 - 10748798
Alignment:
Q  28 aacaatttgtccggtaagattccttcttgtctttataatatctcatcact 77  Q
    ||||||||||| |||| | |||||||||||||||||||||||||||||||    
T  10748847 aacaatttgtctggtatgtttccttcttgtctttataatatctcatcact 10748798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 10610082 - 10610138
Alignment:
Q  23 gtgtcaacaatttgtccggtaagattccttcttgtctttataatatctcatcactta 79  Q
    |||| ||| ||||||| |||| |||||||||||||||||| ||||||||| ||||||    
T  10610082 gtgtaaactatttgtctggtatgattccttcttgtctttacaatatctcagcactta 10610138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 152
Target Start/End: Original strand, 10557379 - 10557421
Alignment:
Q  110 atggctcttttccacccaacatgttccacaccctccccaatct 152  Q
    |||||||| ||||||||||||||||| || |||||||||||||    
T  10557379 atggctctcttccacccaacatgttcaactccctccccaatct 10557421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 10718730 - 10718676
Alignment:
Q  28 aacaatttgtccggtaagattccttcttgtctttataatatctcatcacttatta 82  Q
    ||||||||||| ||||  |||||||||||| |||| |||||||||||||| ||||    
T  10718730 aacaatttgtctggtataattccttcttgtttttacaatatctcatcactcatta 10718676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 152
Target Start/End: Complemental strand, 10218539 - 10218434
Alignment:
Q  47 ttccttcttgtctttataatatctcatcacttattacactttcggcaacacaaaataacttgcatggctcttttccacccaacatgttccacaccctccc 146  Q
    ||||||||||| |||| ||||||||||||||||||   ||  |   ||||   ||||||||  |||||||| |||||||||||||||| ||  |||||||    
T  10218539 ttccttcttgtttttacaatatctcatcacttattgagctcacactaacaatgaataacttttatggctctcttccacccaacatgtttcatgccctccc 10218440  T
Q  147 caatct 152  Q
    ||||||    
T  10218439 caatct 10218434  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 152
Target Start/End: Original strand, 10603213 - 10603254
Alignment:
Q  111 tggctcttttccacccaacatgttccacaccctccccaatct 152  Q
    ||||||| |||||||||| ||||||||||| |||||||||||    
T  10603213 tggctctcttccacccaatatgttccacactctccccaatct 10603254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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