View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11902_low_5 (Length: 659)
Name: NF11902_low_5
Description: NF11902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11902_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 465; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 17 - 646
Target Start/End: Original strand, 52081904 - 52082543
Alignment:
| Q |
17 |
atattgaggttgatgattacaaaaggttgagctcaaagaaaatgcaaaagaaaccgacaaaatgtaccttttacacttccatcctttggaacacaaacaa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
52081904 |
atattgaggttgatgattacaaaaggttgagctcaaagaaaatgcaaaagaaaccgacaaaatgtaccttttacacttccatcctttggaacacataaac |
52082003 |
T |
|
| Q |
117 |
attaaagcataaacaatgatacacacagcttgcaactatttttatcacatgaatgctatctccacaaacaagatacttaatggtcaaagatatatgtcat |
216 |
Q |
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| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52082004 |
a----agcataaacaatgatacacacagcttggaactatttttatcacatgaatgctatctccacaaacaagatacttaatggtcaaagatatatgtcat |
52082099 |
T |
|
| Q |
217 |
gatgagtttcctttacttctaatcaatcaataataatcaccatacccagaatgtgcgat---------------taccttgtaaaatgttagcnnnnnnn |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
52082100 |
gatgagtttcctttacttctaatcaatcaataataatcaccatacccagaatgtgcgatattgttcttggagattaccttgtaaa-tgttagcaataaaa |
52082198 |
T |
|
| Q |
302 |
taatcatcaaccaaactacaattctttctttaatatatgtcatgnnnnnnnnnnnnnnnncatgggaaaagtaaagattgaaatgttgtgatgaagataa |
401 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
52082199 |
taatcatcaaccaaactacatttctttctttaatatatgtcatgaaaaagaaaaacaaaacatgggaaaagtaaagattgaaatgttgtgatgaagataa |
52082298 |
T |
|
| Q |
402 |
catttcaaataatagttttatgactttcagaatactagaaaacaaggcatccatggttcaataaaggtttccacttgtcgtcactaggacaaaaatgaga |
501 |
Q |
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| T |
52082299 |
catttcaaataatagttttatcactttcagaatactagaaaacaaggcatccaaggttcaataaaggtttccacttgtcgtcactaggacaaaaatgaga |
52082398 |
T |
|
| Q |
502 |
gggagccataatttttctcaatgatgaccttaaaattaccatcaccatccagaaattaacatcagcacacacattatgacaatcccacaaatttatctct |
601 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52082399 |
gggagccataatttttctcaatgatgaccttaaaattaccatcaccatccagaaattaacatcagcacacacattatgacaatcccacaaatttatctct |
52082498 |
T |
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| Q |
602 |
ctcagtcgtgtgcagttttctactacgtgcctcactcctttctct |
646 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
52082499 |
ctcagtcgtgtgcagttttctactacgtgcccgactcctttctct |
52082543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 365 - 646
Target Start/End: Original strand, 52092458 - 52092739
Alignment:
| Q |
365 |
gggaaaagtaaagattgaaatgttgtgatgaagataacatttcaaataatagttttatgactttcagaatactagaaaacaaggcatccatggttcaata |
464 |
Q |
| |
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||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
52092458 |
gggaaaaatgaagattgaaatgttgtgatgaagataacatttcaaataactgttttatcactttcagaatactagaaaacaaggcatccatggttcaata |
52092557 |
T |
|
| Q |
465 |
aaggtttccacttgtcgtcactaggacaaaaatgagagggagccataat----ttttctcaatgatgaccttaaaattaccatcaccatccagaaattaa |
560 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||| |||||||| | |||||||||||| |
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| T |
52092558 |
aaggtttccacttgtcgtcact---acaaaaatgagagggagccataatcttaatttctcaatgatgaccttgaaaataccatcatcgtccagaaattaa |
52092654 |
T |
|
| Q |
561 |
catcagcacacacattatgacaatcccacaaatttatctctctcagtcgtgtgcagttttctactacgtgcctcactcctttctct |
646 |
Q |
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||||| ||||||| | | ||||| | | | |||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
52092655 |
catcaacacacacctcacgacaacctcgtatatttatctctctcaatcgtgtgcagtttt-tactacgtgcctcactcctttctct |
52092739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 58 - 199
Target Start/End: Original strand, 52092155 - 52092304
Alignment:
| Q |
58 |
atgcaaaagaaaccgacaaaatgtaccttttacacttccatcctttggaacaca-aaca--aatta---aagcataaacaatgatacacacag--cttgc |
149 |
Q |
| |
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||||||||||| | ||||||| || |||||||||||||||| |||||||||||| |||| | || ||| |||||||| |||||||||| | ||| |
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| T |
52092155 |
atgcaaaagaagctgacaaaaggttccttttacacttccatgctttggaacacataacagcacatagacaagtataaacaaagatacacacacaacctgc |
52092254 |
T |
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| Q |
150 |
aactatttttatcacatgaatgctatctccacaaacaagatacttaatgg |
199 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
52092255 |
aactatttttatcacatgaattctatctccacaaacaagatacttaatgg |
52092304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 52092305 - 52092350
Alignment:
| Q |
222 |
gtttcctttacttctaatcaatcaataataatcaccatacccagaa |
267 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
52092305 |
gtttcctttacttctaatcaatcaataataatcaccaaaaccagaa |
52092350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 589 - 646
Target Start/End: Complemental strand, 35901836 - 35901779
Alignment:
| Q |
589 |
caaatttatctctctcagtcgtgtgcagttttctactacgtgcctcactcctttctct |
646 |
Q |
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||||||||||||||||||| |||| |||||||||| || || ||||||||||||||| |
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| T |
35901836 |
caaatttatctctctcagttgtgtacagttttctatgacttgtctcactcctttctct |
35901779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 452 - 646
Target Start/End: Original strand, 1754287 - 1754481
Alignment:
| Q |
452 |
ccatggttcaataaaggtttccacttgtcgtcactaggacaaaaatgagagggagccataatttttctcaatgatgaccttaaaattaccatcaccatcc |
551 |
Q |
| |
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||||| |||||||| |||||||||||| ||||||||| ||||| || ||||| | | || |||||||| ||| |||| | | ||||||||| ||| |
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| T |
1754287 |
ccatgattcaataagggtttccacttgctatcactaggataaaaaccagggggagtcttgatctttctcaacaatggccttgacaataccatcacattcc |
1754386 |
T |
|
| Q |
552 |
agaaattaacatcagcacacacattatgacaatcccacaaatttatctctctcagtcgtgtgcagttttctactacgtgcctcactcctttctct |
646 |
Q |
| |
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| |||| ||||||| | |||||| | ||| | |||| |||||||| |||| |||||||| ||||||||||| ||| |||||||||||||| |
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| T |
1754387 |
ataaatcaacatcaacggccacattgacataatgtcgcaaacttatctctttcaggcgtgtgcatttttctactacttgcttcactcctttctct |
1754481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 589 - 646
Target Start/End: Complemental strand, 1528397 - 1528340
Alignment:
| Q |
589 |
caaatttatctctctcagtcgtgtgcagttttctactacgtgcctcactcctttctct |
646 |
Q |
| |
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||||||||||||||||||| |||||||||||||||| || ||| | ||||| |||||| |
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| T |
1528397 |
caaatttatctctctcagttgtgtgcagttttctacaacttgcatgactccattctct |
1528340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 575 - 644
Target Start/End: Original strand, 6006218 - 6006287
Alignment:
| Q |
575 |
ttatgacaatcccacaaatttatctctctcagtcgtgtgcagttttctactacgtgcctcactcctttct |
644 |
Q |
| |
|
|||||||||||| ||||||||||||||||| | || ||||||||||||| || ||| ||||||| |||| |
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| T |
6006218 |
ttatgacaatcctgcaaatttatctctctcaattgtttgcagttttctacgacttgcatcactcccttct |
6006287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 589 - 624
Target Start/End: Complemental strand, 12120336 - 12120301
Alignment:
| Q |
589 |
caaatttatctctctcagtcgtgtgcagttttctac |
624 |
Q |
| |
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||||||||||||||||||| |||||||||||||||| |
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| T |
12120336 |
caaatttatctctctcagttgtgtgcagttttctac |
12120301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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