View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11902_low_6 (Length: 595)
Name: NF11902_low_6
Description: NF11902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11902_low_6 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 321 - 595
Target Start/End: Complemental strand, 11210274 - 11209998
Alignment:
| Q |
321 |
agacaaaagcaaaagcttttaccaagaaacgcgtaaatgacagtggatactgctcgataaaacagtatatttcacaaatattatatttttaaggaaaatt |
420 |
Q |
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| T |
11210274 |
agacaaaagcaaaagcttttaccaagaaacgcgtaaatgacagtggatactgctcgataaaacagtttatttcacaaatattatatttttaagggaaatt |
11210175 |
T |
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| Q |
421 |
agatggttgagtagcttaaccgatttcat-tgaagatt-aaaaaagttgaaagagttaaatgactaaattcaaaatctaacaaacaagtaaataatacga |
518 |
Q |
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| T |
11210174 |
agatggttgagtagcttaaccgatttcatctaaagattaaaaaaagttgaaagagttaaatgactaaattcaaactctaacgaacatgtaaataatacga |
11210075 |
T |
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| Q |
519 |
aaatgctacatctaacaattttttcccgataacatcacaaatgattagaagaaatcaaattacattagtataacatt |
595 |
Q |
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| T |
11210074 |
aaatgctacatctaacaatttttcctcgataacatcacaaatgattagaagaaatcaaattacattagtataacatt |
11209998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 7 - 218
Target Start/End: Complemental strand, 11210584 - 11210370
Alignment:
| Q |
7 |
ggagcagagagttgagggttattttggtacatgacaagttggagagtgagatggtgtaggctggtgg---cagacaaatgttctcaagtctactcatcac |
103 |
Q |
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| T |
11210584 |
ggagcaaagagttgagggttattttggtacatgacaagttggagagtgagatggtgtaggctggtggtggcagacaaatgttctcaagtctactcatcaa |
11210485 |
T |
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| Q |
104 |
aagttatctgttttcaacgcaggaaatgggaaaataattaaaatatagggttccatgaaaataaattatatttctttgataaaaacgaaatatctttact |
203 |
Q |
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| T |
11210484 |
aagttatctgttttcaacgcaggaaatgggaaaataattaaaatatagggttccatgaaaataaattatatttctttgataaaaacgaaatatctttact |
11210385 |
T |
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| Q |
204 |
tatttataataggaa |
218 |
Q |
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| T |
11210384 |
tatttataataggaa |
11210370 |
T |
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