View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11902_low_7 (Length: 574)
Name: NF11902_low_7
Description: NF11902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11902_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 10 - 400
Target Start/End: Complemental strand, 44799150 - 44798760
Alignment:
| Q |
10 |
agaagcagagaaaccaacatgcataaactctttaaatctctcagaaagatcaatgaatgaagcaataattggtgttggaggtctagttgaagagtaacta |
109 |
Q |
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| T |
44799150 |
agaagcagagaaaccaacatgcataaactctttaaatctctcagaaagatcaatgaatgaagcaataattggtgttggaggtctagttgaagagtaacta |
44799051 |
T |
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| Q |
110 |
acccaaacacgaaccattttcatatcatctctatactcaatccatgcattgatgattttcccacttttcaaatcaatccgacgtgaaagaagatcagcag |
209 |
Q |
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| T |
44799050 |
acccaaacacgaaccattttcatatcatctctatactcaatccatgcattgatgattttcccacttttcaaatcaatccgacgtgaaagaagatcagcag |
44798951 |
T |
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| Q |
210 |
aagcaaaagaaacaacactgccaagatcaataccaacgtggtttccattaatgtcaccaagagaaggatcaaaacttgtatcaaattcaaccgcaaagta |
309 |
Q |
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| T |
44798950 |
aagcaaaagaaacaacactgccaagatcaataccaacgtggtttccattaatgtcaccaagagaaggatcaaaactcgtatcaaattcaaccgcaaagta |
44798851 |
T |
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| Q |
310 |
agaatcttgatcagaatgaggaaggcccatgtaaccattagagagagacgagaaatcagtggttgatgaaatgagaaaagcaatgccatcg |
400 |
Q |
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| T |
44798850 |
agaatcttgatcagaatgaggaaggcccatgtaaccattagagagagacgagaaatcagtggttgatgaaatgagaaaagcaatgccatcg |
44798760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 462 - 528
Target Start/End: Complemental strand, 44798698 - 44798632
Alignment:
| Q |
462 |
cggttgagttagttaaaggatcaagaaaacgaacaggatagaggtagaaagctcttccaattccaga |
528 |
Q |
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| T |
44798698 |
cggttgagttagttaaaggatcaagaaaacgaacaggatagaggtagaaagctcttccaattccaga |
44798632 |
T |
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