View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11902_low_8 (Length: 572)
Name: NF11902_low_8
Description: NF11902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11902_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 18 - 565
Target Start/End: Original strand, 34391285 - 34391832
Alignment:
| Q |
18 |
gttccttctggacaaacaactaaatctcctttggataactcatattttattctctcagcgtccacatttcgcatcctggttagtctcacggtaggaatgg |
117 |
Q |
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| T |
34391285 |
gttccttctggacagacaactaaatctcctttggataactcatattttattctctcagcgtccacatttcgcatcctggttagtctcacggtaggaatgg |
34391384 |
T |
|
| Q |
118 |
gggagaggatttccgataaccgagaaatagagtatgttaccgcgggggttttacgttggaggacggaagagaggacaacagggtccattagagtgcggtg |
217 |
Q |
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| T |
34391385 |
gggagaggatttccgataaccgagaaatagagtatgttaccgcgggggttttacgttgaaggacggaagagaggacaacagggtccattagagtgcggtg |
34391484 |
T |
|
| Q |
218 |
agtacacacgaaaaggacaccgggaccgcctgcggtgggagggaatggtggatttcccttcacaataactttgccaccaaataaccttgacatgtgagga |
317 |
Q |
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| T |
34391485 |
agtacacacgaaaaggacaccgggaccgcctgcggtgggagggaaaggtggatttcccttcacaataactttgccaccaaataaccttgacatgtgagga |
34391584 |
T |
|
| Q |
318 |
atggcccaaaaaggtaaaatgcctcccaaggttaacctgattatggctagtaaaatacctattgggatccaaaggatgattagtagggaggtgaacggtg |
417 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34391585 |
atggcccaaaaaggtaaaatggctcccaaggttaacctgattatggctagtaaaatacctattgggatccaaaggatgattagtagggaggtgaacggtg |
34391684 |
T |
|
| Q |
418 |
ttggtcgtttcaccaatcggccgtcgtggaagatcaccggatgaggtcgtagaagttggctatcattgtgcttttggcttgtcctaaatggtggttgcat |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34391685 |
ttggtcgtttcaccaatcggccgtcgtggaagatcaccggatgaggtcggagaagttggctatcattgtgcttttggcttgtcctaaatggtggttgcat |
34391784 |
T |
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| Q |
518 |
ttgttcctgcacacatacaacatatgtcatttaaatttatctctgctt |
565 |
Q |
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| T |
34391785 |
ttgttcctgcacacatacaacatatgtcatttaaatttatctttgctt |
34391832 |
T |
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