View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11903_high_12 (Length: 301)
Name: NF11903_high_12
Description: NF11903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11903_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 26097226 - 26096945
Alignment:
| Q |
1 |
gcagttaaacgagagattattgttacccttgcaaactcaaatgtgaaggagatcctcgaggtctggttcaccaatatcaagagagttggtatacctaatt |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26097226 |
gcagttaaacgagagattatagttacccttgcaaactcaaatgtgaaggagatcctcgaggtctggttcaccaatatcaagagagttggtatacctaatt |
26097127 |
T |
|
| Q |
101 |
atctagttgttgccttagacgatgagatggcaaagttttgtgaatcgaataaagtcccattttaccaaagagacccggacaatggttttgatactgttgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26097126 |
atctagttgttgccttagacgatgagattgcaaagttttgtgaatcgaataaagtcccattttaccaaagagacccggacaatggttttgatactgttgg |
26097027 |
T |
|
| Q |
201 |
aaaaatggcaaacggcgcggctgtctccacgctcaaatttcatattctaagagaatttttgcagttgggatatagtgttctt |
282 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26097026 |
aaaaatggtcaacggcgcggctgtctccacgctcaaatttcatattctaagagaatttttgcagttgggatatagtgttctt |
26096945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 26120513 - 26120232
Alignment:
| Q |
1 |
gcagttaaacgagagattattgttacccttgcaaactcaaatgtgaaggagatcctcgaggtctggttcaccaatatcaagagagttggtatacctaatt |
100 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26120513 |
gcagttaaacgagagatcatagttacccttgcaaactcaaatgtgaaagagatcctcgagatctggttcaccaatatcaagagagttggtatacctaatt |
26120414 |
T |
|
| Q |
101 |
atctagttgttgccttagacgatgagatggcaaagttttgtgaatcgaataaagtcccattttaccaaagagacccggacaatggttttgatactgttgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||| ||||||||||||| |
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| T |
26120413 |
atctagttgttgccttagacgatgagattgcaaagttttgtgaatcgaatcaagtcccattttacaaaagagacccggataatggtattgatactgttgg |
26120314 |
T |
|
| Q |
201 |
aaaaatggcaaacggcgcggctgtctccacgctcaaatttcatattctaagagaatttttgcagttgggatatagtgttctt |
282 |
Q |
| |
|
|||||| ||||||||| ||||||||||| |||||||| | |||||||||||||||||||||||||||||| ||||||||| |
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| T |
26120313 |
aaaaattccaaacggcgaggctgtctccagtctcaaattccgtattctaagagaatttttgcagttgggatacagtgttctt |
26120232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 26084951 - 26084670
Alignment:
| Q |
1 |
gcagttaaacgagagattattgttacccttgcaaactcaaatgtgaaggagatcctcgaggtctggttcaccaatatcaagagagttggtatacctaatt |
100 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26084951 |
gcagttaaacgagagatcatagttacccttgcaaactcaaatgtgaaggcaatgctcgaggtctggttcaccaatatcaagagagttggtatacctaatt |
26084852 |
T |
|
| Q |
101 |
atctagttgttgccttagacgatgagatggcaaagttttgtgaatcgaataaagtcccattttaccaaagagacccggacaatggttttgatactgttgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| |||| | ||||||||||||| |
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| T |
26084851 |
atctagttgttgccttagacgatgagattgcaaaattttgtgaatctaataaagtcccattttaccaaagagacccggataatgatattgatactgttgg |
26084752 |
T |
|
| Q |
201 |
aaaaatggcaaacggcgcggctgtctccacgctcaaatttcatattctaagagaatttttgcagttgggatatagtgttctt |
282 |
Q |
| |
|
|||||| ||||||| | |||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
26084751 |
aaaaattccaaacggtggggctgtctccgggcttaaatttcgtattctaagagaatttttgcagttgggatatagtgttctt |
26084670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 26065226 - 26064945
Alignment:
| Q |
1 |
gcagttaaacgagagattattgttacccttgcaaactcaaatgtgaaggagatcctcgaggtctggttcaccaatatcaagagagttggtatacctaatt |
100 |
Q |
| |
|
|||||||||| |||||| || ||| ||||||||||||| ||||| ||||||||||| || ||||||||||| ||||||||||||||||||||| |||||| |
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|
| T |
26065226 |
gcagttaaacaagagatcatagttgcccttgcaaactccaatgttaaggagatcctggaagtctggttcactaatatcaagagagttggtatatctaatt |
26065127 |
T |
|
| Q |
101 |
atctagttgttgccttagacgatgagatggcaaagttttgtgaatcgaataaagtcccattttaccaaagagacccggacaatggttttgatactgttgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||| ||||||||||||| |||||| ||||| ||||||| |
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| T |
26065126 |
atctagttgttgccttagacgatgagattgcaaagttttgtgaattgaatcaagtcccattttacaaaagagacccggataatggtattgatgctgttgg |
26065027 |
T |
|
| Q |
201 |
aaaaatggcaaacggcgcggctgtctccacgctcaaatttcatattctaagagaatttttgcagttgggatatagtgttctt |
282 |
Q |
| |
|
||||| | ||| | ||||||||||| ||| ||||||| ||||||||| |||||||||||| |||||||||| |||||| |
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| T |
26065026 |
aaaaagaggaaagagaacggctgtctccgggcttaaatttcgtattctaagggaatttttgcagctgggatatagcgttctt |
26064945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 26127170 - 26126889
Alignment:
| Q |
1 |
gcagttaaacgagagattattgttacccttgcaaactcaaatgtgaaggagatcctcgaggtctggttcaccaatatcaagagagttggtatacctaatt |
100 |
Q |
| |
|
||||| || |||||||| || ||| ||||||||||||| ||||| ||||| | ||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
26127170 |
gcagtaaaccgagagatcatagttgcccttgcaaactccaatgttaaggaaaccctcgaggtctggttcaccaatatcaagagagtcggtatacctaatt |
26127071 |
T |
|
| Q |
101 |
atctagttgttgccttagacgatgagatggcaaagttttgtgaatcgaataaagtcccattttaccaaagagacccggacaatggttttgatactgttgg |
200 |
Q |
| |
|
|| |||||||||||||||||||||| || |||||||||||||||| ||||||||||| |||||| ||||||||||||| ||| | ||||||||||||| |
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|
| T |
26127070 |
atttagttgttgccttagacgatgaaatttcaaagttttgtgaatcaaataaagtcccgttttacaaaagagacccggatgatgctattgatactgttgg |
26126971 |
T |
|
| Q |
201 |
aaaaatggcaaacggcgcggctgtctccacgctcaaatttcatattctaagagaatttttgcagttgggatatagtgttctt |
282 |
Q |
| |
|
|||||| | | | ||||||||||| ||| ||||||| |||| |||||||||||||||||||||||||||| |||||| |
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|
| T |
26126970 |
aaaaataggagggagagcggctgtctctgggcttaaatttcgtattttaagagaatttttgcagttgggatatagcgttctt |
26126889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 2 - 281
Target Start/End: Complemental strand, 26036577 - 26036298
Alignment:
| Q |
2 |
cagttaaacgagagattattgttacccttgcaaactcaaatgtgaaggagatcctcgaggtctggttcaccaatatcaagagagttggtatacctaatta |
101 |
Q |
| |
|
|||||||||||||||| || || | |||||||| || |||||||||||||| | |||||||||||| | ||||||||||||||||||||| ||||||| |
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|
| T |
26036577 |
cagttaaacgagagatcatagtagcacttgcaaattccaatgtgaaggagatgttagaggtctggttctcaaatatcaagagagttggtatatctaatta |
26036478 |
T |
|
| Q |
102 |
tctagttgttgccttagacgatgagatggcaaagttttgtgaatcgaataaagtcccattttaccaaagagacccggacaatggttttgatactgttgga |
201 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| ||||||||| | ||| |||||||||||||| |||||||||| || ||||| |||| || ||||| |
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|
| T |
26036477 |
tctagttgttgctttagacgatgagatttcaaaattttgtgaaacaaatcaagtcccattttacaaaagagacccagatgatggtattgacaccattgga |
26036378 |
T |
|
| Q |
202 |
aaaatggcaaacggcgcggctgtctccacgctcaaatttcatattctaagagaatttttgcagttgggatatagtgttct |
281 |
Q |
| |
|
||| | | | ||||||||| ||| ||||||| ||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
26036377 |
aaacaaggagggaaccatgctgtctccgggcttaaatttcgtattctaagagaatttttgcagttgggatatggtgttct |
26036298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 6773841 - 6773781
Alignment:
| Q |
59 |
aggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttaga |
119 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| ||| |||||||| | |||||||| ||||| |
|
|
| T |
6773841 |
aggtatggttcaccaatatcaagaaggttggcatatctaattatttggttgttgcattaga |
6773781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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