View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11903_high_15 (Length: 260)

Name: NF11903_high_15
Description: NF11903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11903_high_15
NF11903_high_15
[»] chr1 (4 HSPs)
chr1 (2-245)||(46161168-46161422)
chr1 (117-159)||(46168039-46168081)
chr1 (24-70)||(46182841-46182887)
chr1 (74-112)||(46182916-46182954)


Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 2 - 245
Target Start/End: Original strand, 46161168 - 46161422
Alignment:
Q  2 cctaccaactgagctaagctcattttacttgatgtaaagagtaacaatcaacatgtgcatgatacataaaataaactcctaatactattcataaaatttc 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46161168 cctaccaactgagctaagctcattttacttgatgtaaagagtaacaatcaacatgtgcatgatacataaaataaactcctaatactattcataaaatttc 46161267  T
Q  102 gattgaaatcttttgtttacttcttatttatttatggaaactatcattgaaaatgtggagaatctcatcttgcc-----------nnnnnnnngaaaacc 190  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   |||||||    
T  46161268 gatcgaaatcttttgtttacttcttatttatttatggaaactatcattgaaaatgtggagaatctcatcttgccaaaaaaaaaaaaaaaaaaagaaaacc 46161367  T
Q  191 acacaattggaactgaagataaatacgtggaatctaacattttggttaaaaaatg 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46161368 acacaattggaactgaagataaatacgtggaatctaacattttggttaaaaaatg 46161422  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 159
Target Start/End: Original strand, 46168039 - 46168081
Alignment:
Q  117 tttacttcttatttatttatggaaactatcattgaaaatgtgg 159  Q
    ||||||||||||||||||||||||| |||||| ||||||||||    
T  46168039 tttacttcttatttatttatggaaaatatcatggaaaatgtgg 46168081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 46182841 - 46182887
Alignment:
Q  24 ttttacttgatgtaaagagtaacaatcaacatgtgcatgatacataa 70  Q
    |||||||| ||||||||||||||||| |||| || ||||||||||||    
T  46182841 ttttactttatgtaaagagtaacaattaacacgtacatgatacataa 46182887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 112
Target Start/End: Original strand, 46182916 - 46182954
Alignment:
Q  74 aaactcctaatactattcataaaatttcgattgaaatct 112  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  46182916 aaactcctaatactattcataaaaattcgtttgaaatct 46182954  T

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