View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11903_high_19 (Length: 249)
Name: NF11903_high_19
Description: NF11903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11903_high_19 |
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| [»] scaffold0227 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 29526514 - 29526751
Alignment:
| Q |
1 |
caataggcacagtgccagttcgatcaaaccagaggataatccacccttcaccacaaacacatctggatctagcggctttggcggtggtggaggtaggccg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||| |
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| T |
29526514 |
caataggcacagtgccagttcgatcaaaccagaggataatccacccttcaccacaaacacgtctggatctggcggctttggcggcggtggaggtaggccg |
29526613 |
T |
|
| Q |
101 |
cccaactcgagtgaaacccatccctctccgatagtttttctaggcaatttctccctcgattcggacacactacccataccatgttcataaaagagtctgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
29526614 |
cccaactcgagtgaaacccatccctctccgatagtttttctaggcaatttcgccctcgattcgaacacactactcataccatgttcataaaagagtctgt |
29526713 |
T |
|
| Q |
201 |
cgataccaagaaatttgcacagatctgctttggtctct |
238 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||| |
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| T |
29526714 |
cgataccaagaaatttgcgcagatctgctttggtctct |
29526751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 11 - 238
Target Start/End: Original strand, 39702109 - 39702330
Alignment:
| Q |
11 |
agtgccagttcgatcaaaccagaggataatccacccttcaccacaaacacatctggatctagcggctttggcggtggtggaggtaggccgcccaactcga |
110 |
Q |
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||||||||||| |||||||||||||| ||||||||||||||| ||||| | | ||||||| | | | ||||||| |||| |||||| ||||||| | |
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| T |
39702109 |
agtgccagttcaatcaaaccagaggacaatccacccttcaccgcaaacgcgtttggatctggtgac---ggcggtgctgga---aggccgtccaactcaa |
39702202 |
T |
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| Q |
111 |
gtgaaacccatccctctccgatagtttttctaggcaatttctccctcgattcggacacactacccataccatgttcataaaagagtctgtcgataccaag |
210 |
Q |
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|||||||||||||||||||| ||||| ||||||||||| | ||||| ||||| ||||| ||| || |||||||||| ||| ||| ||| ||||||||| |
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| T |
39702203 |
gtgaaacccatccctctccggtagttgttctaggcaatcccaccctcaattcgaacacaatactcacgccatgttcatcaaatagtttgttgataccaag |
39702302 |
T |
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| Q |
211 |
aaatttgcacagatctgctttggtctct |
238 |
Q |
| |
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||||||||||| |||| ||||||||||| |
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| T |
39702303 |
aaatttgcacaaatctactttggtctct |
39702330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 6082151 - 6081914
Alignment:
| Q |
1 |
caataggcacagtgccagttcgatcaaaccagaggataatccacccttcaccacaaacacatctggatctagcggctttggcggtggtggaggtaggccg |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| | ||| ||||||| ||||||||||||||| |
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| T |
6082151 |
caataggcacagtgccagtttgatcaaaccagaggataatccacccttcaccacaaacacgtctggatctgggggccttggcggcggtggaggtaggccg |
6082052 |
T |
|
| Q |
101 |
cccaactcgagtgaaacccatccctctccgatagtttttctaggcaatttctccctcgattcggacacactacccataccatgttcataaaagagtctgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
6082051 |
cccaactcgagtgaaacccatccctctccgatagtttttctaggcaatttcgccctcgattcgaacacactactcataccatgttcataaaagagtctgt |
6081952 |
T |
|
| Q |
201 |
cgataccaagaaatttgcacagatctgctttggtctct |
238 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||| |
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| T |
6081951 |
cgataccaagaaatttgcgcagatctgctttggtctct |
6081914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 10583649 - 10583413
Alignment:
| Q |
1 |
caataggcacagtgccagttcgatcaaaccagaggataatccacccttcaccacaaacacatctggatctagcggctttggcggtggtggaggtaggccg |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| | ||| ||||||| ||||||||||||||| |
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| T |
10583649 |
caataggcacagtgccagtttgatcaaaccagaggataatccacccttcaccacaaacacgtctggatctgggggccttggcggcggtggaggtaggccg |
10583550 |
T |
|
| Q |
101 |
cccaactcgagtgaaacccatccctctccgatagtttttctaggcaatttctccctcgattcggacacactacccataccatgttcataaaagagtctgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
10583549 |
cccaactcgagtgaaacccatccctctccgatagtttttctaggcaa-gaagccctcgattcgaacacactactcataccatgttcataaaagagtctgt |
10583451 |
T |
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| Q |
201 |
cgataccaagaaatttgcacagatctgctttggtctct |
238 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||| |
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| T |
10583450 |
cgataccaagaaatttgcgcagatctgctttggtctct |
10583413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 49123007 - 49122859
Alignment:
| Q |
1 |
caataggcacagtgccagttcgatcaaaccagaggataatccacccttcaccacaaacacatctggatctagcggctttggcggtggtggaggtaggccg |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||| ||||||||||||||| |
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| T |
49123007 |
caataggcacagtgccagtttgatcaaaccagaggataatccacccttcaccacaaacacgtctggatctggcggccttggcggcggtggaggtaggccg |
49122908 |
T |
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| Q |
101 |
cccaactcgagtgaaacccatccctctccgatagtttttctaggcaatt |
149 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
49122907 |
cccaactcgagtgaaacccatccctcttcgatagtttttctaggcaatt |
49122859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 18132252 - 18132489
Alignment:
| Q |
1 |
caataggcacagtgccagttcgatcaaaccagaggataatccacccttcaccacaaacacatctggatctagcggctttggcggtggtggaggtaggccg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||| | ||||||||| | ||||||||| |||| |
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| T |
18132252 |
caataggcacagtgccagttcgatcaaaccaaaggatcatccacccttcaccacaaacacgtctggatctggtggctttggcagccgtggaggtaagccg |
18132351 |
T |
|
| Q |
101 |
cccaactcgagtgaaacccatccctctccgatagtttttctaggcaatttctccctcgattcggacacactacccataccatgttcataaaagagtctgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||| |||||||||||||||||| ||||||| |
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| T |
18132352 |
cccaactcgagtgaaacccatccctctccgatagtttttctaggcaatttcgccatcgattcgaacacactactcataccatgttcataaaaaagtctgt |
18132451 |
T |
|
| Q |
201 |
cgataccaagaaatttgcacagatctgctttggtctct |
238 |
Q |
| |
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|||||||||||||||||| | ||||||||||||||||| |
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| T |
18132452 |
cgataccaagaaatttgcgctgatctgctttggtctct |
18132489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 98 - 238
Target Start/End: Complemental strand, 11929 - 11789
Alignment:
| Q |
98 |
ccgcccaactcgagtgaaacccatccctctccgatagtttttctaggcaatttctccctcgattcggacacactacccataccatgttcataaaagagtc |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
11929 |
ccgcccaactcgagtgaaacccatccctctccgatagtttttctaggcaattttgccctcgattcgaacacactactcataccatgttcataaaagagtc |
11830 |
T |
|
| Q |
198 |
tgtcgataccaagaaatttgcacagatctgctttggtctct |
238 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |
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| T |
11829 |
tgtcgataccaagaaatttgcgcagatctgctttggtctct |
11789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 11969 - 11928
Alignment:
| Q |
1 |
caataggcacagtgccagttcgatcaaaccagaggataatcc |
42 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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| T |
11969 |
caataggcacagtgccagttcgatcaaaccagaggataatcc |
11928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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