View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11903_high_9 (Length: 369)
Name: NF11903_high_9
Description: NF11903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11903_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 30853785 - 30853447
Alignment:
| Q |
1 |
tccacttaatttctccactaggaattataccgactccatttcaacataaatttctttttataaattaccctgcaatttattttttcaatgcaacaatatt |
100 |
Q |
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| T |
30853785 |
tccacttaatttctccactagaaattataccgacttcatttcaacttaaatttctttttataaatgacccagcaatttattttttcaatgcaacaatatt |
30853686 |
T |
|
| Q |
101 |
tcttcttcttctaattctatccataaatttgtgagtttaattttaatgtactgtccgtattaaacatattacacggtaacacggtctaacatatcataac |
200 |
Q |
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| T |
30853685 |
tcttcttcttctaattctatccataaattagtgagtttgattttaatgtactgtccgtattaaacatattacacggt--------ctaacatatcataac |
30853594 |
T |
|
| Q |
201 |
taatcatgtgcatgaatatggagcggtgaaaatacaagtcaaattttaaataatctatttacaatgatactctctttttatgtgaaattcttgtgagtca |
300 |
Q |
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| T |
30853593 |
taatcatgtgcatgaatatggagtggtgaaaatacaagtcaaattttaaataatctctttacaatgatactctctttttatgtgaaattcttgtgagtca |
30853494 |
T |
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| Q |
301 |
gcattttaataactggtctgagataaattgatgacatatatataaaa |
347 |
Q |
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| T |
30853493 |
gcattttaataactggtatgagataaattgatgacatatatataaaa |
30853447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 205 - 343
Target Start/End: Original strand, 15076858 - 15076995
Alignment:
| Q |
205 |
catgtgcatgaatatggagcggtgaaaatacaagtcaaattttaaataatctatttacaatgatactctctttttat--gtgaaattcttgtgagtcagc |
302 |
Q |
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| T |
15076858 |
catgtgaatgaatttagagtggtgaaaatacaagtcaaattttaaataatc--tctacaatgatactctttttttattagtgaaattcatgtgag-caac |
15076954 |
T |
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| Q |
303 |
attttaataactggtctgagataaattgatgacatatatat |
343 |
Q |
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| T |
15076955 |
attttaaaaattagtctccgataaaatgatgacatctatat |
15076995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 15076664 - 15076727
Alignment:
| Q |
1 |
tccacttaatttctccactaggaattataccgactccatttcaacataaatttctttttataaa |
64 |
Q |
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|||| |||||| ||||||||| ||||||||||||| ||||| ||||| |||||||||||||||| |
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| T |
15076664 |
tccaattaattgctccactagaaattataccgacttcatttgaacattaatttctttttataaa |
15076727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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