View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11903_low_1 (Length: 794)
Name: NF11903_low_1
Description: NF11903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11903_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 473; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 175 - 700
Target Start/End: Complemental strand, 49180844 - 49180320
Alignment:
| Q |
175 |
tagttcggttcaccgcctaaaccaagaacaaattatacaagcataacgacaagcagggctgtttttaaagagttttgtatcagattgcagaaaatttatg |
274 |
Q |
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| T |
49180844 |
tagttcggttcaccgcctaaaccaagaacaaattatacaagcataaagacaagcagggctgtttttaaagagttttgtatcagattgcagaaaatttatg |
49180745 |
T |
|
| Q |
275 |
aaaacttgagacttcggtgagttattggatcagaaccacaaaggggcatagcaaattgaaattaaattcaagacaacaagagaaacagcacagcgaacgc |
374 |
Q |
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| T |
49180744 |
aaaacttgagacttgggtgagttattggatcagaaccacaaaggggcatagcaaattgaaattaaattcaagacaacaagagaaacagcacagcgaacgc |
49180645 |
T |
|
| Q |
375 |
ttacaatccagacaaaagtttctttccaaaaaacacagattgatccatgcttgcacaggcgtatctcacaaaactcaccannnnnnnngcaaggattggg |
474 |
Q |
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| T |
49180644 |
ttacaatccagacaaaagtttctttcagaaaaacacagattgatccatgcttgcacaggcgtatctcacaaaactcacca-ttttttcgcaaggattggg |
49180546 |
T |
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| Q |
475 |
catatcattttatctataataacatgtgaggaaccatgaatagtatgcatagtgaacgaaaggaagatcaaacaaaacacagacacagtctcaaacctga |
574 |
Q |
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| T |
49180545 |
catatcattttatctgtaataacatgtgaggaaccatgaatagtatgcatagtgaacgaaaggaagatcaaacaaaacacagacacagtctcaaacctga |
49180446 |
T |
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| Q |
575 |
cttccagccctgtagcagcaaactcatcttatacgtggcatatagccatttttgtaagtcactgcattaaacaaagaatttaacaggaatccttccccgc |
674 |
Q |
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| T |
49180445 |
cttccagccctgtagcagcaaactcatcttatacgtggcatatagccatttttgtaagtcactgcattgaacaaagaatttaacaggaatccttccccgc |
49180346 |
T |
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| Q |
675 |
gttcaatagcaactagcagcattttc |
700 |
Q |
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| T |
49180345 |
gttcaatagcaactagcagcattttc |
49180320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 49181099 - 49180983
Alignment:
| Q |
17 |
agaattaatatgaattagccagaggagcagtaaattctagaggattacaattcataagctaatgtatcccatcgatagaggaacagtgaattagccaggc |
116 |
Q |
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| T |
49181099 |
agaattaatatgaattagccagaggagcagtaaattctagaggattacaattcataagctaatgtatcccatcgacagaggaacagtgaattagccaggc |
49181000 |
T |
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| Q |
117 |
actcaatactagaaagt |
133 |
Q |
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| T |
49180999 |
actcaatactagaaagt |
49180983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 695 - 788
Target Start/End: Complemental strand, 49180247 - 49180154
Alignment:
| Q |
695 |
attttcccacaaaagttaacaattatgtagttgtcaaccatgcaataggtgaaggacaaatttagtgattttcacctttaatgacctatgcttc |
788 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
49180247 |
attttcccacaaaagttaacaattatgtagttgtcaaccatgcaataggtgaaggacaaatttagtgattttcacctttaatgacctaagcttc |
49180154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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