View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11903_low_10 (Length: 323)
Name: NF11903_low_10
Description: NF11903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11903_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 4e-72; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 7318237 - 7318075
Alignment:
| Q |
18 |
ggtggtagttacatgattttggcctatgaaaaaa----cttatttgggagatattagatgttttgtagttaagctgcctttgttgctcgcggcattcaaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7318237 |
ggtggtagttacatgattttggcctatgaaaaaaaaaacttatttgggacatattagatgttttgtagttaagctgcctttgttgctcgcggcattcaaa |
7318138 |
T |
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| Q |
114 |
gtcagcgatgccattcacttttgttcctgcttctatttaattccactctattgttcttttgtt |
176 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7318137 |
ttcagcgatgccattcacttttgttcctgcttctatttaattccactctattgttcttttgtt |
7318075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 7323711 - 7323544
Alignment:
| Q |
18 |
ggtggtagttacatgattttggcctatgaaaaaacttatttgggagatattagatgttttgtagttaagctgcctttgttgctcgcggcattcaaagtca |
117 |
Q |
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||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||| ||| ||||||||||| |||||||||||||| ||| |
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| T |
7323711 |
ggtggtagttacatgattttggcttatgaaaaagcttatttgggacatattagatgttttgtagtaaagttgcctttgttgttcgcggcattcaaattca |
7323612 |
T |
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| Q |
118 |
gcgatgccattcacttttgttcctgcttctatttaattccactctattgttcttttgttgaatttggg |
185 |
Q |
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| T |
7323611 |
acaatgccattcacttttgttcccgcttctatttaattccactatattgttcttttgttgaatttggg |
7323544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 2492580 - 2492746
Alignment:
| Q |
18 |
ggtggtagttacatgattttggcctatgaaaaaacttatttgggagatattagatgttttgtagttaagctgcctttgttgctcgcggcattcaaagtca |
117 |
Q |
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| T |
2492580 |
ggtggtagttacatgatttttgcttatgcaaaagct-atttggaacatattagatgttttgtagtaaagctgcctttgctgctcgcggcattcaaattca |
2492678 |
T |
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| Q |
118 |
gcgatgccattcacttttgttcctgcttctatttaattccactctattgttcttttgttgaatttggg |
185 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2492679 |
acgatgccattcatttttgttcctgcttctatttaattccactctattgttcttttgttgagtttggg |
2492746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 2502860 - 2503030
Alignment:
| Q |
18 |
ggtggtagttacatgattttggcctatgaaaaaacttatttgggagatattagatgtttt----gtagttaagctgcctttgttgctcgcggcattcaaa |
113 |
Q |
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|||||||||||||||||||||| |||| |||| || |||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
2502860 |
ggtggtagttacatgattttggattatgcaaaagct-atttgggacatattagatgttttttttgtagtaaagctgcctttgttgctcgcggcattcaaa |
2502958 |
T |
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| Q |
114 |
gtcagcgatgccattcacttttgttcctgcttctatttaattccactctattgttcttttgttgaatttggg |
185 |
Q |
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||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2502959 |
ttcaacgatgccattcatttttgttcctgcttctatttaattccactctattgttcttttgttgagtttggg |
2503030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 28 - 185
Target Start/End: Complemental strand, 7442347 - 7442190
Alignment:
| Q |
28 |
acatgattttggcctatgaaaaaacttatttgggagatattagatgttttgtagttaagctgcctttgttgctcgcggcattcaaagtcagcgatgccat |
127 |
Q |
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||||||||||||| ||||||||| ||||||||||| ||||||||||||||| ||| ||||||||| |||||||||| || ||| || ||| | || || |
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| T |
7442347 |
acatgattttggcttatgaaaaagcttatttgggacatattagatgttttgcagtgaagctgcctatgttgctcgcagctttcgaattcaacaatttcac |
7442248 |
T |
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| Q |
128 |
tcacttttgttcctgcttctatttaattccactctattgttcttttgttgaatttggg |
185 |
Q |
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|||| ||||||||| | | |||||| ||| ||||| |||||||||||||||||||| |
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| T |
7442247 |
tcaccattgttcctgatcatttttaatgccattctatagttcttttgttgaatttggg |
7442190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 239
Target Start/End: Complemental strand, 7310624 - 7310569
Alignment:
| Q |
184 |
ggaaaatagttgctattagatgacggtctaaaattattttacaatatccgtcatca |
239 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
7310624 |
ggaaaatagttgctattagatgacggtctaaaattactttacaatatacgtcatca |
7310569 |
T |
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