View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11903_low_11 (Length: 315)
Name: NF11903_low_11
Description: NF11903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11903_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 7 - 298
Target Start/End: Original strand, 6854565 - 6854858
Alignment:
| Q |
7 |
gcaattcacttccccacattcagcaacacattaccaaagattaaaagttagtttacgctcaaacaactttagaatttggcatattttttggctatagagg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6854565 |
gcaattcacttccccacattcagcaacacattaccaaagattaaaagttagtttacgctcaaacaactttagaatttggcatattttttggctatagagg |
6854664 |
T |
|
| Q |
107 |
ttcaacacctcaaaaatggtagccatagcgctgctcagcaacaatgttagcattgttgttctatccgacgccccatttctacatgccaaaacaaaacata |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
6854665 |
ttcaacacctcaaaaatggtagccatagcgctgctcagcaacaatgttagcattcttgttctatccaacgcccca-ttctacatgccaaaacaaaacata |
6854763 |
T |
|
| Q |
207 |
tggagcttgacatattctttctcagagagattcatcagccaaaacctacttgtcaagcacatgccagctcttgac---taagtggtagatgttag |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
6854764 |
tggagcttgacatattctttctcagagagattcatcagccaaaacctacttgtcaagcacataccagctcttgactaataagtggtagatgttag |
6854858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 138 - 298
Target Start/End: Complemental strand, 6823712 - 6823552
Alignment:
| Q |
138 |
tgctcagcaacaatgttagcattgttgttctatccgacgccccatttctacatgccaaaacaaaacatatggagcttgacatattctttctcagagagat |
237 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||| ||| ||||||||| | |||| |||||||| |||| |||| ||||||| || ||||||| |
|
|
| T |
6823712 |
tgctctgcaacaatgttagcattgttgttctatcctacgaccccattctacatgtcgaaaccaaacatatagagcctgacctattcttgcttagagagag |
6823613 |
T |
|
| Q |
238 |
tcatcagccaaaacctacttgtcaagcacatgccagctcttgactaagtggtagatgttag |
298 |
Q |
| |
|
||||||||| |||| || |||||||||||||||||||||||||| || ||||||| ||||| |
|
|
| T |
6823612 |
tcatcagccgaaacataattgtcaagcacatgccagctcttgaccaactggtagaagttag |
6823552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University