View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11903_low_13 (Length: 301)
Name: NF11903_low_13
Description: NF11903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11903_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 53126894 - 53127177
Alignment:
| Q |
1 |
aacagattgtacattactttatccaacaaccgagcagtggtttgagggggagcgcatttgatgtcatacttcaggcatgcattcttcagatattcattag |
100 |
Q |
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| T |
53126894 |
aacagattgtacattactttatccaacaaccgagcagtggtttgagggggagcgcatttgatgtcatacttcaagcatgcattcttcagatattcattag |
53126993 |
T |
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| Q |
101 |
cttcctcactagccaagtccttcggaatacgaagtcctgccgtactctctagttcctcaatcatatcaatcctcctgtaacgataagaaaaatacaaatg |
200 |
Q |
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| T |
53126994 |
cttcctcactagccaagtccttcgtaatactaagtcctgccatactctctagttcctcaatcatatcaatcctcctgtaacgataagaaaaatacaaatg |
53127093 |
T |
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| Q |
201 |
agttgtgcgtgccaaaatataatagattttataaccataattgatgactgacaagtttacactgcacctgaagggtggagtgaa |
284 |
Q |
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| T |
53127094 |
agttgtgcgtgccaaaatataatagattttataaccataattgatgactgacaagtttacactgcacctgaagggtggagtgaa |
53127177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 53109070 - 53109346
Alignment:
| Q |
1 |
aacagattgtacattactttatccaacaaccgagcagtggtttgagggggagcgcatttgatgtcatacttcaggcatgcattcttcagatattcattag |
100 |
Q |
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| T |
53109070 |
aacagattgtacattactttatccatcaaccgagcagtggtttgagggggagcgcatttgatgtcatagttcaagcatacattcttcagatattcattag |
53109169 |
T |
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| Q |
101 |
cttcctcactagccaagtccttcggaatacgaagtcctgccgtactctctagttcctcaatcatatcaatcctcctgtaacgataagaaaaatacaaatg |
200 |
Q |
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| T |
53109170 |
cttcctcactggccaagtccttgggaatactaagtcctgtcatactctctagttcctcaatcatatcaatcctcctgtaac---aataaaaatacaaatg |
53109266 |
T |
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| Q |
201 |
agttgtgcgtgccaaaatataatagattttataaccataattgatgactgacaagtttacactgcacctgaagggtggagtgaa |
284 |
Q |
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| T |
53109267 |
agt----cattccaaagtacattaggttgtataatcacaattgatgactgacaaatttacactgcacctgaaaggtggagtgaa |
53109346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 53114495 - 53114771
Alignment:
| Q |
1 |
aacagattgtacattactttatccaacaaccgagcagtggtttgagggggagcgcatttgatgtcatacttcaggcatgcattcttcagatattcattag |
100 |
Q |
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|||||||||| ||||||||||||||||| |||||||| ||||||| |||||||||||| |||||||||| || |||||||||||||||||||| ||||| |
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| T |
53114495 |
aacagattgtgaattactttatccaacaatcgagcagttgtttgagcgggagcgcatttaatgtcatactccaagcatgcattcttcagatattgattag |
53114594 |
T |
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| Q |
101 |
cttcctcactagccaagtccttcggaatacgaagtcctgccgtactctctagttcctcaatcatatcaatcctcctgtaacgataagaaaaatacaaatg |
200 |
Q |
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| T |
53114595 |
cttcgtcagtggccaagtccttgggaatactaagtcctgccatactctctagttcctcaatcatatcaatcctcctgta---aaattaaaaatccaaatg |
53114691 |
T |
|
| Q |
201 |
agttgtgcgtgccaaaatataatagattttataaccataattgatgactgacaagtttacactgcacctgaagggtggagtgaa |
284 |
Q |
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| T |
53114692 |
agtt----atgaaaaaatataatagattttataatctcaattgatgagtgacaaatttagactgcacctgaagggtggagtgaa |
53114771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 53118417 - 53118569
Alignment:
| Q |
1 |
aacagattgtacattactttatccaaca-acc-gagcagtggtttgagggggagcgcatttgatgtcatacttcaggcatgcattcttcagatattcatt |
98 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
53118417 |
aacagattgtacattactttatccaacacaccagagcagtggtttgagggcgagcgcatttgttgtcatacttcaagcatgcattcttcagatattcatt |
53118516 |
T |
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| Q |
99 |
agcttcctcactagccaagtccttcggaatacgaagtcctgccgtactctcta |
151 |
Q |
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| T |
53118517 |
agcttcctcactggccaagtccttcggaatattaagtcctaccatactctcta |
53118569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 181
Target Start/End: Complemental strand, 15840086 - 15839918
Alignment:
| Q |
13 |
attactttatccaacaaccgagcagtggtttgagggggagcgcatttgatgtcatacttcaggcatgcattcttcagatattcattagcttcctcactag |
112 |
Q |
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||||| ||||||||||| || ||||| |||| ||| || | |||||||| || ||||||| ||| |||| | | ||||||| ||||||||| |||| | |
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| T |
15840086 |
attaccttatccaacaaacgtgcagttgtttcaggagggggacatttgatttcgtacttcaagcaggcatcccttagatattgattagcttcagcactcg |
15839987 |
T |
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| Q |
113 |
ccaagtccttcggaatacgaagtcctgccgtactctctagttcctcaatcatatcaatcctcctgtaac |
181 |
Q |
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|||||| || ||||||| || |||||| | ||||||| | |||||||| |||||||| ||||||| |
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| T |
15839986 |
tcaagtctttaggaatactgaggcctgccatctcctctagtccttcaatcatgtcaatccttctgtaac |
15839918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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