View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11903_low_14 (Length: 278)

Name: NF11903_low_14
Description: NF11903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11903_low_14
NF11903_low_14
[»] chr2 (3 HSPs)
chr2 (1-278)||(18913616-18913893)
chr2 (30-278)||(18908868-18909116)
chr2 (75-278)||(18920824-18921027)
[»] chr7 (6 HSPs)
chr7 (38-250)||(19351156-19351368)
chr7 (41-250)||(19357681-19357893)
chr7 (33-255)||(19721787-19722009)
chr7 (33-254)||(19779368-19779589)
chr7 (33-254)||(19887794-19888015)
chr7 (108-159)||(15572088-15572139)
[»] scaffold0464 (1 HSPs)
scaffold0464 (38-274)||(7832-8068)
[»] chr3 (2 HSPs)
chr3 (33-274)||(32578928-32579169)
chr3 (119-274)||(12734853-12735008)
[»] chr6 (2 HSPs)
chr6 (41-257)||(14749171-14749387)
chr6 (119-171)||(20770502-20770554)


Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 18913893 - 18913616
Alignment:
Q  1 taaccttcgtatctgttcccgcccaatgatggataacggtgtgtatgtgagtggaacaattaactggttggctattcgagatatgaccaattataaatgg 100  Q
    |||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18913893 taaccttcgtatctattcccgcctgatgatggataacggtgtgtatgtgagtggaacaattaactggttggctattcgagatatgaccaattataaatgg 18913794  T
Q  101 aatgatattaccattgaacaatttgtgatagtctcgcttgatttggctacagagacatacgaacagttgttgccacctagcggttttgttgaagtaccac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  18913793 aatgatattaccattgaacaatttgtgatagtctcgcttgatttggctacagagacataccaacagttgttgccacctagcggttttgttgaagcaccac 18913694  T
Q  201 ccgttgaaccgtctgttagtgtgttgatggattgtcaatgtttttctcaccgtttcaggggaatccattttgttatat 278  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  18913693 ccgttgaaccgtctgttagtgtgttgatggattgtctatgtttttctcaccgtttcaggggaacccattttgttatat 18913616  T

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Target: chr2; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 30 - 278
Target Start/End: Complemental strand, 18909116 - 18908868
Alignment:
Q  30 tggataacggtgtgtatgtgagtggaacaattaactggttggctattcgagatatgaccaattataaatggaatgatattaccattgaacaatttgtgat 129  Q
    |||||||||||||||||||||||||  | ||||||||||||||||||||||||| |||  | ||| |||||||||||||||| ||  |||||||||||||    
T  18909116 tggataacggtgtgtatgtgagtggttctattaactggttggctattcgagataagactgaatatgaatggaatgatattactatcaaacaatttgtgat 18909017  T
Q  130 agtctcgcttgatttggctacagagacatacgaacagttgttgccacctagcggttttgttgaagtaccacccgttgaaccgtctgttagtgtgttgatg 229  Q
    ||||||||||||||||| ||||||||||||    || ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18909016 agtctcgcttgatttggatacagagacatatcggcaattgctgccacctagcggttttgttgaagtaccacctgttgaaccgtctgttagtgtgttgatg 18908917  T
Q  230 gattgtcaatgtttttctcaccgtttcaggggaatccattttgttatat 278  Q
    ||||||| |||||||||||||||||| || | || ||||||||||||||    
T  18908916 gattgtctatgtttttctcaccgttttagagaaacccattttgttatat 18908868  T

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Target: chr2; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 75 - 278
Target Start/End: Complemental strand, 18921027 - 18920824
Alignment:
Q  75 ttcgagatatgaccaattataaatggaatgatattaccattgaacaatttgtgatagtctcgcttgatttggctacagagacatacgaacagttgttgcc 174  Q
    ||||||||| |||  | ||| |||||||||||||||| ||  |||||||||||||||||||||||||||||| ||||||||||||    || ||| ||||    
T  18921027 ttcgagataagactgaatatgaatggaatgatattactatcaaacaatttgtgatagtctcgcttgatttggttacagagacatatcggcaattgctgcc 18920928  T
Q  175 acctagcggttttgttgaagtaccacccgttgaaccgtctgttagtgtgttgatggattgtcaatgtttttctcaccgtttcaggggaatccattttgtt 274  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||| || | || ||||||||||    
T  18920927 acctagcggttttgttgaagtaccacctgttgaaccgtctgttagtgtgttgatggattgtatatgtttttctcaccgttttagagaaacccattttgtt 18920828  T
Q  275 atat 278  Q
    ||||    
T  18920827 atat 18920824  T

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Target: chr7 (Bit Score: 89; Significance: 6e-43; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 38 - 250
Target Start/End: Complemental strand, 19351368 - 19351156
Alignment:
Q  38 ggtgtgtatgtgagtggaacaattaactggttggctattcgagatatgaccaattataaatggaatgatattaccattgaacaatttgtgatagtctcgc 137  Q
    |||||||||||||||||| | ||||||||||||||||||| | |||| || || |||||||||||||||||||  || || |||||||||||  | || |    
T  19351368 ggtgtgtatgtgagtggatctattaactggttggctattcaaaatattactaaatataaatggaatgatattagaatcgagcaatttgtgattatttcac 19351269  T
Q  138 ttgatttggctacagagacatacgaacagttgttgccacctagcggttttgttgaagtaccacccgttgaaccgtctgttagtgtgttgatggattgtca 237  Q
    ||||| ||| ||| ||||||||  ||||||| ||||||||| | |||||||||||||||||||| | ||| || || |||| ||| |||||||||||||     
T  19351268 ttgatctgggtacggagacatatcaacagtttttgccacctcgtggttttgttgaagtaccacctgctgagccatccgttactgtattgatggattgtct 19351169  T
Q  238 atgtttttctcac 250  Q
    |||||||||||||    
T  19351168 atgtttttctcac 19351156  T

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Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 41 - 250
Target Start/End: Original strand, 19357681 - 19357893
Alignment:
Q  41 gtgtatgtgagtggaacaattaactggttggctattcgagatatgaccaat---tataaatggaatgatattaccattgaacaatttgtgatagtctcgc 137  Q
    ||||||||||| || || ||||||||||||||||||||| |||||||  ||   ||| |||||  ||||||||| ||||| ||||||||||| ||||| |    
T  19357681 gtgtatgtgagaggcactattaactggttggctattcgaaatatgactgatcaatatgaatggcgtgatattacaattgatcaatttgtgatcgtctcac 19357780  T
Q  138 ttgatttggctacagagacatacgaacagttgttgccacctagcggttttgttgaagtaccacccgttgaaccgtctgttagtgtgttgatggattgtca 237  Q
    ||||| |||| || ||||||||    |||||| |||||||||||||||||||||||||||||||  || | || | ||| | ||| ||||||||| |||     
T  19357781 ttgatctggccacggagacatataggcagttgctgccacctagcggttttgttgaagtaccacctattcagccatttgtaactgtattgatggatagtct 19357880  T
Q  238 atgtttttctcac 250  Q
    |||||||||||||    
T  19357881 atgtttttctcac 19357893  T

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Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 33 - 255
Target Start/End: Original strand, 19721787 - 19722009
Alignment:
Q  33 ataacggtgtgtatgtgagtggaacaattaactggttggctattcgagatatgaccaattataaatggaatgatattaccattgaacaatttgtgatagt 132  Q
    |||| ||||| |||||||| || || ||||||||||||||||||||| | | |||  | ||| |||||| |||||||    | || |||||||| || ||    
T  19721787 ataatggtgtttatgtgagcggcactattaactggttggctattcgaaacacgactgagtatcaatggactgatattttagtcgagcaatttgtaattgt 19721886  T
Q  133 ctcgcttgatttggctacagagacatacgaacagttgttgccacctagcggttttgttgaagtaccacccgttgaaccgtctgttagtgtgttgatggat 232  Q
    |||||||||| ||||||| ||||||||  ||||| |||||||||||   || ||||||||||||||| | ||||| |||||||||| ||| ||||||||     
T  19721887 ctcgcttgatctggctacggagacatatcaacagctgttgccacctgaggggtttgttgaagtaccaactgttgagccgtctgttactgtattgatggac 19721986  T
Q  233 tgtcaatgtttttctcaccgttt 255  Q
    |||| ||||||||||||| ||||    
T  19721987 tgtctatgtttttctcacagttt 19722009  T

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Target: chr7; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 33 - 254
Target Start/End: Original strand, 19779368 - 19779589
Alignment:
Q  33 ataacggtgtgtatgtgagtggaacaattaactggttggctattcgagatatgaccaattataaatggaatgatattaccattgaacaatttgtgatagt 132  Q
    |||| ||||| ||||||||||| || |||||||||||| |||||| | ||| |||| | ||| | |||||||||||| | ||||| |||||| | ||  |    
T  19779368 ataatggtgtttatgtgagtggcactattaactggttgactattcaaaataagaccgaatatgagtggaatgatatttcaattgatcaatttctcatcct 19779467  T
Q  133 ctcgcttgatttggctacagagacatacgaacagttgttgccacctagcggttttgttgaagtaccacccgttgaaccgtctgttagtgtgttgatggat 232  Q
    ||| |||||| || |||| ||||| ||| |||| |||  |||||||   || |||||||| |||||||| ||||| ||  |||||| ||| |||||||||    
T  19779468 ctcacttgatctgactaccgagacgtaccaacatttgcggccacctcagggatttgttgatgtaccacctgttgatccagctgttactgtattgatggat 19779567  T
Q  233 tgtcaatgtttttctcaccgtt 254  Q
    |||| |||||||||||||||||    
T  19779568 tgtctatgtttttctcaccgtt 19779589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 33 - 254
Target Start/End: Complemental strand, 19888015 - 19887794
Alignment:
Q  33 ataacggtgtgtatgtgagtggaacaattaactggttggctattcgagatatgaccaattataaatggaatgatattaccattgaacaatttgtgatagt 132  Q
    |||| ||||| ||||||||||| || |||||||||||| |||||| | ||| |||| | ||| | |||||||||||| | ||||| |||||| | ||  |    
T  19888015 ataatggtgtttatgtgagtggcactattaactggttgactattcaaaataagaccgaatatgagtggaatgatatttcaattgatcaatttctcatcct 19887916  T
Q  133 ctcgcttgatttggctacagagacatacgaacagttgttgccacctagcggttttgttgaagtaccacccgttgaaccgtctgttagtgtgttgatggat 232  Q
    ||| |||||| || |||| ||||| ||| |||| |||  |||||||   || |||||||| |||||||| ||||| ||  |||||| ||| |||||||||    
T  19887915 ctcacttgatctgactaccgagacgtaccaacatttgcggccacctcagggatttgttgatgtaccacctgttgatccagctgttactgtattgatggat 19887816  T
Q  233 tgtcaatgtttttctcaccgtt 254  Q
    |||| |||||||||||||||||    
T  19887815 tgtctatgtttttctcaccgtt 19887794  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 159
Target Start/End: Complemental strand, 15572139 - 15572088
Alignment:
Q  108 ttaccattgaacaatttgtgatagtctcgcttgatttggctacagagacata 159  Q
    |||| |||||||||||||||||| |||||||||||||||  ||||| |||||    
T  15572139 ttacgattgaacaatttgtgataatctcgcttgatttggggacagaaacata 15572088  T

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Target: scaffold0464 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 38 - 274
Target Start/End: Original strand, 7832 - 8068
Alignment:
Q  38 ggtgtgtatgtgagtggaacaattaactggttggctattcgagatatgaccaattataaatggaatgatattaccattgaacaatttgtgatagtctcgc 137  Q
    |||| |||||||||||| ||  |||||||||||||||||||| ||||||   | ||| |||||||||||||| | ||  | ||||||||||| || || |    
T  7832 ggtgcgtatgtgagtggcactgttaactggttggctattcgaaatatgaatgaatatgaatggaatgatatttcaatcaaccaatttgtgatcgtatcac 7931  T
Q  138 ttgatttggctacagagacatacgaacagttgttgccacctagcggttttgttgaagtaccacccgttgaaccgtctgttagtgtgttgatggattgtca 237  Q
    ||| | |||||||||||||||     |||||| ||||||| | ||||||||||||||||||||| ||||| || ||||||| ||| |||||| || |||     
T  7932 ttgttctggctacagagacatttaggcagttgctgccacccaacggttttgttgaagtaccacctgttgagccatctgttactgtattgatgaatcgtct 8031  T
Q  238 atgtttttctcaccgtttcaggggaatccattttgtt 274  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  8032 atgtttttctcaccgtttcaagggaacccattttgtt 8068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 33 - 274
Target Start/End: Complemental strand, 32579169 - 32578928
Alignment:
Q  33 ataacggtgtgtatgtgagtggaacaattaactggttggctattcgagatatgaccaattataaatggaatgatattaccattgaacaatttgtgatagt 132  Q
    |||||||||||||||||||||| || ||||| ||||||||||||||| ||| |||  | ||| || ||||||||||| | || || |||||| | ||  |    
T  32579169 ataacggtgtgtatgtgagtggcactattaattggttggctattcgaaataagactgaatatgaaaggaatgatatttcaatcgagcaatttctcatttt 32579070  T
Q  133 ctcgcttgatttggctacagagacatacgaacagttgttgccacctagcggttttgttgaagtaccacccgttgaaccgtctgttagtgtgttgatggat 232  Q
     || |||||| || |||| |||||||||  ||| ||| ||||| |    || ||||||||||||||||| ||||| ||  |||||| |||||||||||||    
T  32579069 atcacttgatctgactacggagacataccgacatttgctgccatcgcagggatttgttgaagtaccaccggttgagccagctgttactgtgttgatggat 32578970  T
Q  233 tgtcaatgtttttctcaccgtttcaggggaatccattttgtt 274  Q
    |||| |||||||||||||||||||| ||  | ||||||||||    
T  32578969 tgtctatgtttttctcaccgtttcaaggagacccattttgtt 32578928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 119 - 274
Target Start/End: Complemental strand, 12735008 - 12734853
Alignment:
Q  119 caatttgtgatagtctcgcttgatttggctacagagacatacgaacagttgttgccacctagcggttttgttgaagtaccacccgttgaaccgtctgtta 218  Q
    ||||||||||| || || |||| | |||||||||||||||     |||||||||||||| | ||||||||||||| ||||||| ||||| || |||||||    
T  12735008 caatttgtgatcgtatcacttgttctggctacagagacatttaggcagttgttgccacccaacggttttgttgaaataccacctgttgagccatctgtta 12734909  T
Q  219 gtgtgttgatggattgtcaatgtttttctcaccgtttcaggggaatccattttgtt 274  Q
     ||| ||||||||| ||| |||||||||||||||||||| ||||| ||||||||||    
T  12734908 ctgtattgatggatcgtctatgtttttctcaccgtttcaagggaacccattttgtt 12734853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 257
Target Start/End: Original strand, 14749171 - 14749387
Alignment:
Q  41 gtgtatgtgagtggaacaattaactggttggctattcgagatatgaccaattataaatggaatgatattaccattgaacaatttgtgatagtctcgcttg 140  Q
    |||||||||||||| |  ||||||||||||||||||| | ||| |||| | ||| | | |||||||||| | || || |||||| | || || || ||||    
T  14749171 gtgtatgtgagtggcagtattaactggttggctattcaaaataagaccgaatatgattagaatgatatttcaatcgaccaatttctcattgtttcacttg 14749270  T
Q  141 atttggctacagagacatacgaacagttgttgccacctagcggttttgttgaagtaccacccgttgaaccgtctgttagtgtgttgatggattgtcaatg 240  Q
    || |  |||| |||||||||   |  || |||||||||   || ||||||||||||||| | ||||| || |||||||   | ||||||||||||| |||    
T  14749271 atctaactacggagacataccgtcgtttcttgccacctcagggatttgttgaagtaccatctgttgagccatctgttaccattttgatggattgtctatg 14749370  T
Q  241 tttttctcaccgtttca 257  Q
    |||||||||||||||||    
T  14749371 tttttctcaccgtttca 14749387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 20770502 - 20770554
Alignment:
Q  119 caatttgtgatagtctcgcttgatttggctacagagacatacgaacagttgtt 171  Q
    |||||||||||  |||| ||||||||||| | |||||||||| ||||||||||    
T  20770502 caatttgtgatcatctcccttgatttggcgaaagagacatacaaacagttgtt 20770554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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