View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11903_low_15 (Length: 260)
Name: NF11903_low_15
Description: NF11903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11903_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 2 - 245
Target Start/End: Original strand, 46161168 - 46161422
Alignment:
| Q |
2 |
cctaccaactgagctaagctcattttacttgatgtaaagagtaacaatcaacatgtgcatgatacataaaataaactcctaatactattcataaaatttc |
101 |
Q |
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| T |
46161168 |
cctaccaactgagctaagctcattttacttgatgtaaagagtaacaatcaacatgtgcatgatacataaaataaactcctaatactattcataaaatttc |
46161267 |
T |
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| Q |
102 |
gattgaaatcttttgtttacttcttatttatttatggaaactatcattgaaaatgtggagaatctcatcttgcc-----------nnnnnnnngaaaacc |
190 |
Q |
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| T |
46161268 |
gatcgaaatcttttgtttacttcttatttatttatggaaactatcattgaaaatgtggagaatctcatcttgccaaaaaaaaaaaaaaaaaaagaaaacc |
46161367 |
T |
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| Q |
191 |
acacaattggaactgaagataaatacgtggaatctaacattttggttaaaaaatg |
245 |
Q |
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| T |
46161368 |
acacaattggaactgaagataaatacgtggaatctaacattttggttaaaaaatg |
46161422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 159
Target Start/End: Original strand, 46168039 - 46168081
Alignment:
| Q |
117 |
tttacttcttatttatttatggaaactatcattgaaaatgtgg |
159 |
Q |
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| T |
46168039 |
tttacttcttatttatttatggaaaatatcatggaaaatgtgg |
46168081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 46182841 - 46182887
Alignment:
| Q |
24 |
ttttacttgatgtaaagagtaacaatcaacatgtgcatgatacataa |
70 |
Q |
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| T |
46182841 |
ttttactttatgtaaagagtaacaattaacacgtacatgatacataa |
46182887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 112
Target Start/End: Original strand, 46182916 - 46182954
Alignment:
| Q |
74 |
aaactcctaatactattcataaaatttcgattgaaatct |
112 |
Q |
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| T |
46182916 |
aaactcctaatactattcataaaaattcgtttgaaatct |
46182954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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