View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11903_low_18 (Length: 250)

Name: NF11903_low_18
Description: NF11903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11903_low_18
NF11903_low_18
[»] chr3 (13 HSPs)
chr3 (1-234)||(7323637-7323865)
chr3 (1-234)||(7318159-7318385)
chr3 (1-219)||(2502706-2502918)
chr3 (1-237)||(7442280-7442509)
chr3 (98-239)||(2492518-2492658)
chr3 (116-222)||(756983-757089)
chr3 (12-78)||(9607947-9608015)
chr3 (1-78)||(665119-665199)
chr3 (1-46)||(2636339-2636384)
chr3 (8-41)||(9561368-9561401)
chr3 (8-43)||(757178-757213)
chr3 (2-78)||(767626-767704)
chr3 (2-41)||(2658598-2658637)
[»] chr2 (1 HSPs)
chr2 (112-174)||(1370693-1370755)


Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 7323865 - 7323637
Alignment:
Q  1 taaactgaatatgttatataatactattgtgatgtcattttctaagaatattgaatatccaattttagcacatatgtatgtagctctgaatattagtttt 100  Q
    |||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||    |||||||||||| |||||    
T  7323865 taaactaaatatgttatataatactattgtgatgtcattttttacgaatattgaatatccaattttagcacatatgta----gctctgaatattcgtttt 7323770  T
Q  101 ttaataagtgatttagcaatgagatggaaggtgtttgttagggattaaaggaagtagatggtggtagttacatgattttggcctatgaaaaaacttattt 200  Q
    | |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  7323769 t-aataagtgttttagcaatgagatagaaggtgtttgttagggattaaaggaagtagatggtggtagttacatgattttggcttatgaaaaagcttattt 7323671  T
Q  201 gggagatattagatgttttgtagttaagctgcct 234  Q
    |||| ||||||||||||||||||| ||| |||||    
T  7323670 gggacatattagatgttttgtagtaaagttgcct 7323637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 7318385 - 7318159
Alignment:
Q  1 taaactgaatatgttatataatactattgtgatgtcattttctaagaatattgaatatccaattttagcacatatgtatgtagctctgaatattagtttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    ||||||||||||||||||||||    
T  7318385 taaactgaatatgttatataatactattgtgatgtcattttctaagaagtttgaatatccaattttagcacata----tgtagctctgaatattagtttt 7318290  T
Q  101 ttaataagtgatttagcaatgagatggaaggtgtttgttagggattaaaggaagtagatggtggtagttacatgattttggcctatg----aaaaaactt 196  Q
    ||||||||||||||||||||||||||||| |||||||       |||| ||||||||||||||||||||||||||||||||||||||    |||||||||    
T  7318289 ttaataagtgatttagcaatgagatggaatgtgtttg-------ttaatggaagtagatggtggtagttacatgattttggcctatgaaaaaaaaaactt 7318197  T
Q  197 atttgggagatattagatgttttgtagttaagctgcct 234  Q
    |||||||| |||||||||||||||||||||||||||||    
T  7318196 atttgggacatattagatgttttgtagttaagctgcct 7318159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 2502706 - 2502918
Alignment:
Q  1 taaactgaatatgttatataatactattgtgatgtcattttctaagaatattgaatatccaattttagcacatatgtatgtagctctgaatattagtttt 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    ||||||||||||||||||    
T  2502706 taaactgaatatgttatataatattattgtgatgtcattttctaagaatattgaatatccaattttaacacatatgta----gctctgaatattagtttt 2502801  T
Q  101 ttaataagtgatttagcaatgagatggaaggtgtttgttagggattaaaggaagtagatggtggtagttacatgattttggcctatgaaaaaacttattt 200  Q
     ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||| | |||||    
T  2502802 -taataagtgttttagcaatgagatggaaggtgtttgttagggattaaaggaagtagatggtggtagttacatgattttggattatgcaaaagc-tattt 2502899  T
Q  201 gggagatattagatgtttt 219  Q
    |||| ||||||||||||||    
T  2502900 gggacatattagatgtttt 2502918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 7442509 - 7442280
Alignment:
Q  1 taaactgaatatgttatataatactattgtgatgtcattttctaa-gaatattgaatatccaattttagcacatatgtatgtagctctgaatattagttt 99  Q
    ||||||||||||||||||||||||||| |||| |||| ||| ||| ||||||||||||||||||||||||||||||||     |||||||||||||||||    
T  7442509 taaactgaatatgttatataatactat-gtgaggtcactttttaaagaatattgaatatccaattttagcacatatgtt----gctctgaatattagttt 7442415  T
Q  100 tttaataagtgatttagcaatgagatggaaggtgtttgttagggattaaaggaagtagatggtggtagttacatgattttggcctatgaaaaaacttatt 199  Q
    || | |||||| ||||||||||||||||||||| || || ||||| |||||||||||||| ||||||   ||||||||||||| ||||||||| ||||||    
T  7442414 tt-attaagtgttttagcaatgagatggaaggtattcgtcagggactaaaggaagtagatagtggtaa--acatgattttggcttatgaaaaagcttatt 7442318  T
Q  200 tgggagatattagatgttttgtagttaagctgcctatg 237  Q
    ||||| ||||||||||||||| ||| ||||||||||||    
T  7442317 tgggacatattagatgttttgcagtgaagctgcctatg 7442280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 98 - 239
Target Start/End: Original strand, 2492518 - 2492658
Alignment:
Q  98 tttttaataagtgatttagcaatgagatggaaggtgtttgttagggattaaaggaagtagatggtggtagttacatgattttggcctatgaaaaaactta 197  Q
    |||||||  |||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| || |||| |||| | ||    
T  2492518 tttttaaatagtgttttagcaatgagatggaaggtgtttgttagggatttaaggaagtcgatggtggtagttacatgatttttgcttatgcaaaagc-ta 2492616  T
Q  198 tttgggagatattagatgttttgtagttaagctgcctatgct 239  Q
    ||||| | ||||||||||||||||||| ||||||||| ||||    
T  2492617 tttggaacatattagatgttttgtagtaaagctgcctttgct 2492658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 116 - 222
Target Start/End: Complemental strand, 757089 - 756983
Alignment:
Q  116 gcaatgagatggaaggtgtttgttagggattaaaggaagtagatggtggtagttacatgattttggcctatgaaaaaacttatttgggagatattagatg 215  Q
    |||||||| |||| ||| |||||||| ||||| ||||||||||||||| |||||||| ||||||||  ||||||||  ||||||||| | |||| ||||     
T  757089 gcaatgaggtggatggtatttgttagtgattagaggaagtagatggtgctagttacaagattttggtttatgaaaaggcttatttggaacatatgagata 756990  T
Q  216 ttttgta 222  Q
    |||||||    
T  756989 ttttgta 756983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 9608015 - 9607947
Alignment:
Q  12 tgttatataatactattgtgatgtcattttct--aagaatattgaatatccaattttagcacatatgta 78  Q
    ||||||||||||||||||||||| |||| | |  ||||||||||||||| |||||||||||||||||||    
T  9608015 tgttatataatactattgtgatgccattcttttcaagaatattgaatattcaattttagcacatatgta 9607947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 665199 - 665119
Alignment:
Q  1 taaactgaatatgttatataatactattgtgatgtcattttct---aagaatattgaatatccaattttagcacatatgta 78  Q
    ||||||| |||||||||||| |||||||||||||||||||  |   ||||||||| ||||| |||||||| ||||||||||    
T  665199 taaactggatatgttatatagtactattgtgatgtcatttcttaaaaagaatattcaatattcaattttatcacatatgta 665119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 2636339 - 2636384
Alignment:
Q  1 taaactgaatatgttatataatactattgtgatgtcattttctaag 46  Q
    |||||||||||||| |||||||||||||||||||||| ||| ||||    
T  2636339 taaactgaatatgtcatataatactattgtgatgtcagtttttaag 2636384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 9561401 - 9561368
Alignment:
Q  8 aatatgttatataatactattgtgatgtcatttt 41  Q
    ||||||||||||||||||||||||||||||||||    
T  9561401 aatatgttatataatactattgtgatgtcatttt 9561368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 757213 - 757178
Alignment:
Q  8 aatatgttatataatactattgtgatgtcattttct 43  Q
    ||||| ||||||||||||||||||||||||||||||    
T  757213 aatatattatataatactattgtgatgtcattttct 757178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 767704 - 767626
Alignment:
Q  2 aaactgaatatgttatataatactattgtgatgtcattttct--aagaatattgaatatccaattttagcacatatgta 78  Q
    |||||| |||||||| | |||||||||| |||||| |||| |  |||||||||||||||||  ||||| ||||||||||    
T  767704 aaactggatatgttacagaatactattgcgatgtcgtttttttaaagaatattgaatatccgtttttaccacatatgta 767626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 2658637 - 2658598
Alignment:
Q  2 aaactgaatatgttatataatactattgtgatgtcatttt 41  Q
    |||||||||||||||||||| ||||||||||||| |||||    
T  2658637 aaactgaatatgttatataacactattgtgatgtaatttt 2658598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 1370755 - 1370693
Alignment:
Q  112 tttagcaatgagatggaaggtgtttgttagggattaaaggaagtagatggtggtagttacatg 174  Q
    |||||||||||| |  || || || ||||| ||||||||||||||||||||||||||||||||    
T  1370755 tttagcaatgaggttaaatgtattagttagtgattaaaggaagtagatggtggtagttacatg 1370693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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