View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11903_low_2 (Length: 523)
Name: NF11903_low_2
Description: NF11903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11903_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 20 - 348
Target Start/End: Complemental strand, 2622211 - 2621890
Alignment:
| Q |
20 |
ccgatttgcatctaaggagccgatttaaagactcttacatcagttttactttgtatgctcttcgagcttaaaagcatagtagtattatgttgtctaatgt |
119 |
Q |
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| T |
2622211 |
ccgatttgcatctaaggagccgatttaaagactcttacatcagttttactttgtacgctcttcgagcttaaaagcatagtagtattatgttgtctaatgt |
2622112 |
T |
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| Q |
120 |
ctagctgtattgaaaagtgtaattgggaagttattgaatacaaatgaagaaaccataacattactccaagtagtggtaaaaaatgttggaaaaattcttt |
219 |
Q |
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| T |
2622111 |
ctagctgtattgaaaagtataattgtgaagttattgaatacaaatgaagaaaccataacattactccaagtagtggtaaaaaatgttggaaaaattcttt |
2622012 |
T |
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| Q |
220 |
gaatttcttttatcctgctggacaaaaagaatatcaacaaaagctcttttaggactcaaaactttcacttataagctttcaaatgaaacatgatacatga |
319 |
Q |
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| T |
2622011 |
gaatttcttttatcctgctggacaaaaagaatatcaacaaaagctcttttaggactcaaaactttcacttataagctttcaa-------atgatacatga |
2621919 |
T |
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| Q |
320 |
aaagtaaactcggctacctagctttattc |
348 |
Q |
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| T |
2621918 |
aaagtaaactcggctacctagctttattc |
2621890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 384 - 517
Target Start/End: Complemental strand, 2621854 - 2621721
Alignment:
| Q |
384 |
gctcaaagttggataactcaatacataagtttgctttgcagtaacaaccaaatcgaaaatcaaattctgattcaacaataaatatattacatcactatga |
483 |
Q |
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| T |
2621854 |
gctcaaagttggataactcaatacataagtttgctttgcagtagcaaccaaatcgaaaatcaaattctgattcaataataaatatattacatcactatga |
2621755 |
T |
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| Q |
484 |
agtatcgtcatctaaatagatattcctttgcttc |
517 |
Q |
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| T |
2621754 |
agtatcgtcatctaaatagatattcctttgcttc |
2621721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 203 - 307
Target Start/End: Original strand, 2476696 - 2476801
Alignment:
| Q |
203 |
tgttggaaaaattctttgaatttcttttatcctgctggacaaaaagaatatcaacaaaagctcttttaggactc--aaaactttcacttataagctttca |
300 |
Q |
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| T |
2476696 |
tgttagaaaaattgtttgaatttcttttttgctgctgga-aaaaagaatgtcaacagaagttctttcaggagtcatacaactttgatttataagctttca |
2476794 |
T |
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| Q |
301 |
aatgaaa |
307 |
Q |
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| T |
2476795 |
aatgaaa |
2476801 |
T |
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