View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11903_low_3 (Length: 522)
Name: NF11903_low_3
Description: NF11903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11903_low_3 |
 | |
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| [»] scaffold0464 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 478; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Original strand, 18913892 - 18914397
Alignment:
| Q |
1 |
taaacgggacaataggaaaacttggaatatccttccatacattatcgcctagactgaaaactttcacggtgatagcagagaatcctaccaccttataagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18913892 |
taaacgggacaataggaaaacttggaatatccttccatacattatcacctagactgaaaactttcacggtgatagcagagaatcctaccaccttataagt |
18913991 |
T |
|
| Q |
101 |
gtcgtttaaaacatcatagccgaatgttaaccttaaacggttctcggaaaaccctaaattttcagataatgaatttgtggctgggttccataaacggaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18913992 |
gtcgtttaaaacatcatagccgaatgttaaccttaaacggttctcggaaaaccctaaattttcagataatgaatttgtggctgggttccataaacggaac |
18914091 |
T |
|
| Q |
201 |
caatagttatcatgcttagcggttccacgcaaacaaatcaatccattgcaggaaccaactatttgataacaatccacattactcaaaaagtaataaggat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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|
| T |
18914092 |
caatagttatcatgcttagcggttccacgcaaacaaatcaatccattgcaggaaccaactatttgataacaatccatattactcaaaaggtaataaggat |
18914191 |
T |
|
| Q |
301 |
cattgtgaatggcgaattccctcaatcgtaagtagtgaggtatgtagtgatccatgagtaacggactttcgagcaagcgacttatgggaatgggaacaac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
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|
| T |
18914192 |
cattgtgaatggcgaattccctcaatcgtaagtagtgaggtacgtagtgatccatgagtaacggactttcgagcaagtaacttataggaatgggaacaac |
18914291 |
T |
|
| Q |
401 |
actcaaatcaatgccggcaggactggcccagtcaggtaatagtaaaatggtggtgtttcgtggtgatcgatgaaggtgcaatttgacgaaggaaggatga |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18914292 |
actcaaatcaatgccggcaggactggcccagtcaggtaatagtaaaatggtggtgtttcgtggtgatcgatgaaggtgcaatttgacgaaggaaggatga |
18914391 |
T |
|
| Q |
501 |
gaaatt |
506 |
Q |
| |
|
|||||| |
|
|
| T |
18914392 |
gaaatt |
18914397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 2 - 204
Target Start/End: Original strand, 18909148 - 18909350
Alignment:
| Q |
2 |
aaacgggacaataggaaaacttggaatatccttccatacattatcgcctagactgaaaactttcacggtgatagcagagaatcctaccaccttataagtg |
101 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||| |||||||| | | ||||||||||||||| ||| ||||||||||| | |||||||||||| || |
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|
| T |
18909148 |
aaacggaacaataggaaaacttggaatatctctccaaacattatccctcaaactgaaaactttcactgtgttagcagagaatgccaccaccttataaatg |
18909247 |
T |
|
| Q |
102 |
tcgtttaaaacatcatagccgaatgttaaccttaaacggttctcggaaaaccctaaattttcagataatgaatttgtggctgggttccataaacggaacc |
201 |
Q |
| |
|
|| |||| || ||||||||||||||||||||| ||| ||| | ||||| ||||||||||||| || ||| ||||||||||||||||||||| |
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|
| T |
18909248 |
tcatttataatatcatagccgaatgttaacctgaaatagttggttaagttacctaatttttcagataatgtgttcgtgactgggttccataaacggaacc |
18909347 |
T |
|
| Q |
202 |
aat |
204 |
Q |
| |
|
||| |
|
|
| T |
18909348 |
aat |
18909350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 2 - 130
Target Start/End: Original strand, 18921075 - 18921203
Alignment:
| Q |
2 |
aaacgggacaataggaaaacttggaatatccttccatacattatcgcctagactgaaaactttcacggtgatagcagagaatcctaccaccttataagtg |
101 |
Q |
| |
|
|||||| ||||||||||||||| |||||||| |||| |||||||| | | ||||||||||||||| ||| |||||||||| | |||||||||||||| |
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|
| T |
18921075 |
aaacggaacaataggaaaactttgaatatccctccaaacattatcactcaaactgaaaactttcaccgtgttagcagagaagtccaccaccttataagtt |
18921174 |
T |
|
| Q |
102 |
tcgtttaaaacatcatagccgaatgttaa |
130 |
Q |
| |
|
|||||| ||| ||||||||| |||||||| |
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|
| T |
18921175 |
tcgtttgaaatatcatagccaaatgttaa |
18921203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 360 - 506
Target Start/End: Original strand, 18921399 - 18921545
Alignment:
| Q |
360 |
aacggactttcgagcaagcgacttatgggaatgggaacaacactcaaatcaatgccggcaggactggcccagtcaggtaatagtaaaatggtggtgtttc |
459 |
Q |
| |
|
||||||||||||||||| |||||| ||||| || ||| |||||||||| || || ||||| |||| ||||| ||||||||||| | | |||||| | |
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|
| T |
18921399 |
aacggactttcgagcaaatgacttacaggaattggtacagcactcaaatccatctcgtcaggattggcgcagtctggtaatagtaagacgtgggtgttcc |
18921498 |
T |
|
| Q |
460 |
gtggtgatcgatgaaggtgcaatttgacgaaggaaggatgagaaatt |
506 |
Q |
| |
|
| || |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
18921499 |
gcggcgatcgatgaaggtgcattttgacgaaggaaggatgagaaatt |
18921545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 224 - 300
Target Start/End: Original strand, 18921305 - 18921381
Alignment:
| Q |
224 |
tccacgcaaacaaatcaatccattgcaggaaccaactatttgataacaatccacattactcaaaaagtaataaggat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||| ||||||| ||||||||||| ||||||||||| |
|
|
| T |
18921305 |
tccacgcaaacaaatcaatccattgcaggaaccaatgacatgatcgcaatccatattactcaaaaggtaataaggat |
18921381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 452 - 506
Target Start/End: Original strand, 18909595 - 18909649
Alignment:
| Q |
452 |
ggtgtttcgtggtgatcgatgaaggtgcaatttgacgaaggaaggatgagaaatt |
506 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
18909595 |
ggtgttccgtggtgatcggtgaaggtgcaatttggcgaagaaaggatgagaaatt |
18909649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 87 - 204
Target Start/End: Complemental strand, 19779248 - 19779131
Alignment:
| Q |
87 |
accaccttataagtgtcgtttaaaacatcatagccgaatgttaaccttaaacggttctcggaaaaccctaaattttcagataatgaatttgtggctgggt |
186 |
Q |
| |
|
||||||||||||||||| ||| ||| |||||| || ||||||| ||| ||| || | || ||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
19779248 |
accaccttataagtgtcatttgaaatatcatatccaaatgttagcctcaaaaacttgtttaaacaccctaaatcttcagataatgtgtttgtggctgggt |
19779149 |
T |
|
| Q |
187 |
tccataaacggaaccaat |
204 |
Q |
| |
|
|||| ||||| ||||||| |
|
|
| T |
19779148 |
tccaaaaacgaaaccaat |
19779131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 87 - 202
Target Start/End: Original strand, 19351469 - 19351584
Alignment:
| Q |
87 |
accaccttataagtgtcgtttaaaacatcatagccgaatgttaaccttaaacggttctcggaaaaccctaaattttcagataatgaatttgtggctgggt |
186 |
Q |
| |
|
||||||||||||||||| ||| ||| ||||||||| ||||||||| | ||| || ||| |||||| ||||||||||||| ||||||||||||| |
|
|
| T |
19351469 |
accaccttataagtgtcatttgaaatatcatagccaaatgttaacttaaaaaatttagttgaataccctattttttcagataatgtctttgtggctgggt |
19351568 |
T |
|
| Q |
187 |
tccataaacggaacca |
202 |
Q |
| |
|
|||| ||||| ||||| |
|
|
| T |
19351569 |
tccagaaacgtaacca |
19351584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 87 - 204
Target Start/End: Original strand, 19888135 - 19888252
Alignment:
| Q |
87 |
accaccttataagtgtcgtttaaaacatcatagccgaatgttaaccttaaacggttctcggaaaaccctaaattttcagataatgaatttgtggctgggt |
186 |
Q |
| |
|
||||||||||||||||| ||| ||| |||||| || ||||||||||| ||| | | || ||||||| | ||||||||||| ||||||||||||| |
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|
| T |
19888135 |
accaccttataagtgtcatttgaaatatcatatccaaatgttaacctgaaaaactcgtttaaacaccctaattcttcagataatgtgtttgtggctgggt |
19888234 |
T |
|
| Q |
187 |
tccataaacggaaccaat |
204 |
Q |
| |
|
|||| ||||| ||||||| |
|
|
| T |
19888235 |
tccaaaaacgaaaccaat |
19888252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 230 - 262
Target Start/End: Original strand, 29454721 - 29454753
Alignment:
| Q |
230 |
caaacaaatcaatccattgcaggaaccaactat |
262 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
|
|
| T |
29454721 |
caaacagatcaatccattgcaggaaccaactat |
29454753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0464 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0464
Description:
Target: scaffold0464; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 312
Target Start/End: Complemental strand, 7535 - 7452
Alignment:
| Q |
229 |
gcaaacaaatcaatccattgcaggaaccaactatttgataacaatccacattactcaaaaagtaataaggatcattgtgaatgg |
312 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| || | | | ||||||| ||||||||| ||||||||||| |||| |||||| |
|
|
| T |
7535 |
gcaaacatatcaatccattacaggaaccaacgatattacagcaatccatattactcaatcggtaataaggataattgagaatgg |
7452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 202
Target Start/End: Original strand, 12735310 - 12735353
Alignment:
| Q |
159 |
ttttcagataatgaatttgtggctgggttccataaacggaacca |
202 |
Q |
| |
|
||||||||||||| |||||||||||||||||| | ||||||||| |
|
|
| T |
12735310 |
ttttcagataatgtatttgtggctgggttccagagacggaacca |
12735353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 230 - 262
Target Start/End: Complemental strand, 3625220 - 3625188
Alignment:
| Q |
230 |
caaacaaatcaatccattgcaggaaccaactat |
262 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
|
|
| T |
3625220 |
caaacatatcaatccattgcaggaaccaactat |
3625188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 14749039 - 14748993
Alignment:
| Q |
87 |
accaccttataagtgtcgtttaaaacatcatagccgaatgttaacct |
133 |
Q |
| |
|
||||||||||||||||||||| ||| |||||| || ||||||||||| |
|
|
| T |
14749039 |
accaccttataagtgtcgtttgaaatatcatatccaaatgttaacct |
14748993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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