View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11903_low_5 (Length: 470)
Name: NF11903_low_5
Description: NF11903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11903_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 20 - 392
Target Start/End: Complemental strand, 45800736 - 45800364
Alignment:
| Q |
20 |
cataatagtcatcgatatataaagtgctaaacgtatggaaaccctaactactactctactataggaaacctaattacacattgccgcgtctcccttgttc |
119 |
Q |
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| T |
45800736 |
cataacagtcctcaatatataaagtgctaaacgtatggaaaccctaactactactctactataggaaacctaattacacattgccgcgtcgcccttgttc |
45800637 |
T |
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| Q |
120 |
tcggtttactggtatgtatgttcttctgattagcnnnnnnnagtgttacatgtacagtatactataggaacatcattcactgtaannnnnnngccactct |
219 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| | |||||||| |
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| T |
45800636 |
tcggtttactggtatgtatgttcttctgattagctttttttagtgttacatgtacagtatactatagaaacatcattcactgttatttttttgccactct |
45800537 |
T |
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| Q |
220 |
caaacaacactaccgtttgttctattactatacaatcagttagtagcacctagcttttgtgtttcttataaacaaatcttaccttctgaatgcataattt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45800536 |
caaacaacactaccgtttgttctattactatacaatcagttagtagcacctagcttttgtgtttcttataaacaaatcttaccttctgaatgcataattt |
45800437 |
T |
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| Q |
320 |
ggtaaatgaataaaagctttgttagattagggttgttcattcaaaattgaatttatttattatcgtgttctac |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45800436 |
ggtaaatgaataaaagctttgttagattagggttgttcattcaaaattgaatttatttattattgtgttctac |
45800364 |
T |
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