View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11903_low_6 (Length: 463)
Name: NF11903_low_6
Description: NF11903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11903_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 13 - 450
Target Start/End: Complemental strand, 23982361 - 23981923
Alignment:
| Q |
13 |
agatgaagcatcaagcgtagccatgaaatcaacatcttaattgtcttctcaaatagtatgaatgattatgaaaggattattctctctcaacatatctttg |
112 |
Q |
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| T |
23982361 |
agatgaagcatcaagcgtagccataaaatcaacatcttaattatcttctcaaatagtatgaatgattttgaaaagattattctctctcaacatatttttg |
23982262 |
T |
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| Q |
113 |
atattttggctctaacatttgagaaagtgattccaataatcaagagtaaaactctaatttaatttctaaagtattgttctgctgctacttagttctaaaa |
212 |
Q |
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| T |
23982261 |
atattttggctctaacatttgagaaagtgattccaataatcaagagtaaaactctaatttaatttctaaagtattgttctgctgctacttagttctaaaa |
23982162 |
T |
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| Q |
213 |
taacaataagtaatttgtactcatttttgtctacaagtctttgctaaatatttttatatactgtaaaaactacttataaatagacacaaaaatcggacta |
312 |
Q |
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| T |
23982161 |
taacaataagtaatttgtactcatttttgtctataagtcttggctaaatatttttatataccgtaaaaactacttataaatagacacaaaaatcggacta |
23982062 |
T |
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| Q |
313 |
cttacaaaacgttgctgatt-ttttattatttttagatgtgctttgggaactaagatagtaaattggggatttactcaataacgatactcgtttttattg |
411 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23982061 |
cttacaaaacgttgctgatttttttattatttttagatgtgctttgggaactaagatagtaaattggggatttactcaataacgatactcgttcttatta |
23981962 |
T |
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| Q |
412 |
taaagttgcaagttgaaaatatattagattagatgtaag |
450 |
Q |
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| T |
23981961 |
taaagttgcaagttggaaatatattagattagatgtaag |
23981923 |
T |
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