View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11903_low_8 (Length: 418)
Name: NF11903_low_8
Description: NF11903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11903_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 12 - 398
Target Start/End: Complemental strand, 40079344 - 40078948
Alignment:
| Q |
12 |
gagatggaaatggatacatgtaattaaggttagcagcaaacttcgttcctgcaacgtcaacaacataacaaacacatgcatatttttataacgaaatgcg |
111 |
Q |
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| T |
40079344 |
gagatggaaatggatacatgtaattaaggttagcagcaaacttcgttcctgcaacgtcaacaacataacaaacacatgcatatttttattacgaaatgcg |
40079245 |
T |
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| Q |
112 |
tgaaaaattggtaacggtatgcacataaagtgggagttatagcacctatatagaatagaacnnnnnnncttaaataactgataaataattgttatgttac |
211 |
Q |
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| T |
40079244 |
tgaaaaattggtaacggtatgcacataaaatgggagttaaagcacctatatagaatagaacaaaaaaacttaaataactgataaataattgttatgttac |
40079145 |
T |
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| Q |
212 |
aattagacatgtattttgtcaatcttttgttatattcttgcccaacaatgaaaagttggttttttcttcttcaaaataacatgattaaacatg------- |
304 |
Q |
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| T |
40079144 |
aattagacatgtattttgtcaatcttttgttatattcttgcccaacaatgaaaagttggtttcttcttcttcaaaataacatgattaaacatgttttttt |
40079045 |
T |
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| Q |
305 |
---nnnnnnnnncacaaaaatatgtggtatattattggcctttggttcttctacatccgaattttctctacatcctctacctcttttggtatgtgga |
398 |
Q |
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| T |
40079044 |
ttttttttttatcacaaaaatatgtggtatattattggcctttggttcttctacatccgaattttctctacatcctctacctcttttggtatgtgga |
40078948 |
T |
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