View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11904_high_11 (Length: 337)
Name: NF11904_high_11
Description: NF11904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11904_high_11 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 56 - 337
Target Start/End: Complemental strand, 38816652 - 38816371
Alignment:
| Q |
56 |
atagttatattcgtgaatcgtgatagtgttggagactgacatctgttggacactggacacacctttaatatgaagtctcggtgctagatatttatgggag |
155 |
Q |
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| T |
38816652 |
atagttatattcgtgaatcgtgatagtgttggagactgacatctgttggacactgcacacacctttaatatgaagtctcggtgctagatatttatgggag |
38816553 |
T |
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| Q |
156 |
atatttatttgtgaagtttctttctaaggctttcttgttgtgtgttcaggtgaagatttgagtgatcttgctgtggaacattcaatttgcccttctaaag |
255 |
Q |
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| T |
38816552 |
atatttatttgtgaagtttctttctaaggctttcttgttgtgtgttcaggtgaagatttgagtgatcttgctgtggaacattcaatttgcccttctaaag |
38816453 |
T |
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| Q |
256 |
atgaaggaggaatgcttgggtgggtgagaaagggacaaatggtatgctgttgtttaggtttaattaaaccttgttcttaggg |
337 |
Q |
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| T |
38816452 |
atgaaggaggaatgcttgggtgggtgagaaagggacaaatggtatgctgttgtttaggtttaattaaaccttgttcttaggg |
38816371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 191 - 337
Target Start/End: Complemental strand, 38821928 - 38821785
Alignment:
| Q |
191 |
tgttgtgtgttcaggtgaagatttgagtgatcttgctgtggaacattcaatttgcccttctaaagatgaaggaggaatgcttgggtgggtgagaaaggga |
290 |
Q |
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| T |
38821928 |
tgttgtgtgtccaggtgaagatttgagcgatcttgctgtggactattcggtgtgcccatctaaagaagaaggaggaaggcttgggtgggtgagaaaggga |
38821829 |
T |
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| Q |
291 |
caaatggtatgctgttgtttaggtttaattaaaccttgttcttaggg |
337 |
Q |
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| T |
38821828 |
caaatggta---tgatgtttagatttgcttaaatcttgttcttaggg |
38821785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 61
Target Start/End: Complemental strand, 38816932 - 38816901
Alignment:
| Q |
30 |
caacagagagtcgctgcaggttaaaaatagtt |
61 |
Q |
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| T |
38816932 |
caacagagagtcgctgcaggttaaaaatagtt |
38816901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 120
Target Start/End: Complemental strand, 35665597 - 35665559
Alignment:
| Q |
82 |
tgttggagactgacatctgttggacactggacacacctt |
120 |
Q |
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| T |
35665597 |
tgttggaaactgacatgtgttggacactggacacacctt |
35665559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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