View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11904_high_13 (Length: 318)

Name: NF11904_high_13
Description: NF11904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11904_high_13
NF11904_high_13
[»] chr6 (3 HSPs)
chr6 (164-316)||(21908644-21908796)
chr6 (11-117)||(21908843-21908949)
chr6 (164-228)||(21698906-21698970)
[»] chr7 (3 HSPs)
chr7 (255-314)||(10202611-10202670)
chr7 (252-304)||(23392455-23392506)
chr7 (257-302)||(13905087-13905132)
[»] chr4 (7 HSPs)
chr4 (247-295)||(22304352-22304400)
chr4 (248-304)||(12100802-12100858)
chr4 (247-302)||(22296200-22296255)
chr4 (252-298)||(22166898-22166944)
chr4 (255-304)||(16431715-16431764)
chr4 (267-304)||(22185054-22185091)
chr4 (246-314)||(19314448-19314516)
[»] chr1 (3 HSPs)
chr1 (258-304)||(9883718-9883764)
chr1 (255-304)||(9260956-9261005)
chr1 (247-304)||(31967396-31967453)
[»] chr3 (1 HSPs)
chr3 (245-314)||(3025511-3025579)
[»] chr2 (1 HSPs)
chr2 (258-306)||(30956929-30956977)


Alignment Details
Target: chr6 (Bit Score: 145; Significance: 3e-76; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 164 - 316
Target Start/End: Complemental strand, 21908796 - 21908644
Alignment:
Q  164 tgagccatatttttcctcttttacatgtaataaagaggattttcttgatcattttatagttaaaagttaatggtctattacttttaatttcaattaaata 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  21908796 tgagccatatttttcctcttttacatgtaataaagaggattttcttgatcaatttatagttaaaagttaatggtctattacttttaatttcaattaaata 21908697  T
Q  264 gtttttagcatttaggagtttcaagaagtcatttataaaatattaattaattc 316  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  21908696 gtttttagcatttaggagtttcaagaagccatttataaaatattaattaattc 21908644  T

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Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 21908949 - 21908843
Alignment:
Q  11 agaagaaaaaatgttagaaaattgtgataagtgttgtgcataagataaaattagaaaattgaacataatgtaaaaaatgacatacttggttcccttgctt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21908949 agaagaaaaaatgttagaaaattgtgataagtgttgtgcataagataaaattagaaaattgaacataatgtaaaaaatgacatacttggttcccttgctt 21908850  T
Q  111 caacaag 117  Q
    |||||||    
T  21908849 caacaag 21908843  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 21698906 - 21698970
Alignment:
Q  164 tgagccatatttttcctcttttacatgtaataaagaggattttcttgatcattttatagttaaaa 228  Q
    ||||||||||||||| || |||| ||||| ||||||   || | |||||||||||||||||||||    
T  21698906 tgagccatatttttcatcctttaaatgtactaaagatatttattttgatcattttatagttaaaa 21698970  T

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Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 10202611 - 10202670
Alignment:
Q  255 aattaaatagtttttagcatttaggagtttcaagaagtcatttataaaatattaattaat 314  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||  ||||||||    
T  10202611 aattaaatagtttttaacatttaggagtttcaagaagtcgtttataaaattataattaat 10202670  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 23392506 - 23392455
Alignment:
Q  252 ttcaattaaatagtttttagcatttaggagtttcaagaagtcatttataaaat 304  Q
    ||||||||||||||||||| | ||||| |||||||||||| ||||||||||||    
T  23392506 ttcaattaaatagtttttaacctttag-agtttcaagaagccatttataaaat 23392455  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 13905087 - 13905132
Alignment:
Q  257 ttaaatagtttttagcatttaggagtttcaagaagtcatttataaa 302  Q
    |||||||||||||||||||||| |||| ||||||| || |||||||    
T  13905087 ttaaatagtttttagcatttagaagttgcaagaagccagttataaa 13905132  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 247 - 295
Target Start/End: Complemental strand, 22304400 - 22304352
Alignment:
Q  247 ttaatttcaattaaatagtttttagcatttaggagtttcaagaagtcat 295  Q
    |||||||||| ||||||||||||| |||||||||||| |||||||||||    
T  22304400 ttaatttcaactaaatagtttttaacatttaggagttacaagaagtcat 22304352  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 304
Target Start/End: Original strand, 12100802 - 12100858
Alignment:
Q  248 taatttcaattaaatagtttttagcatttaggagtttcaagaagtcatttataaaat 304  Q
    |||||||||||||||||||||||  | ||||||||||||| ||||| || |||||||    
T  12100802 taatttcaattaaatagtttttaagacttaggagtttcaaaaagtcgttgataaaat 12100858  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 302
Target Start/End: Complemental strand, 22296255 - 22296200
Alignment:
Q  247 ttaatttcaattaaatagtttttagcatttaggagtttcaagaagtcatttataaa 302  Q
    |||| |||||||||||||||| |||||||||| | || ||||||| ||||||||||    
T  22296255 ttaaattcaattaaatagtttctagcatttagaaattgcaagaagccatttataaa 22296200  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 298
Target Start/End: Complemental strand, 22166944 - 22166898
Alignment:
Q  252 ttcaattaaatagtttttagcatttaggagtttcaagaagtcattta 298  Q
    |||||||||||  | ||||||||||||||||| ||||||||||||||    
T  22166944 ttcaattaaattttatttagcatttaggagttacaagaagtcattta 22166898  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 304
Target Start/End: Complemental strand, 16431764 - 16431715
Alignment:
Q  255 aattaaatagtttttagcatttaggagtttcaagaagtcatttataaaat 304  Q
    |||||||||||||||| |||||||||||| ||  ||| ||||||||||||    
T  16431764 aattaaatagtttttaacatttaggagttacattaagccatttataaaat 16431715  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 22185091 - 22185054
Alignment:
Q  267 tttagcatttaggagtttcaagaagtcatttataaaat 304  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  22185091 tttagcatttagtagttacaagaagtcatttataaaat 22185054  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 314
Target Start/End: Complemental strand, 19314516 - 19314448
Alignment:
Q  246 tttaatttcaattaaatagtttttagcatttaggagtttcaagaagtcatttataaaatattaattaat 314  Q
    ||||| ||||||||||||||| |||||| |||||||||   |||| ||||||| |||||  ||||||||    
T  19314516 tttaacttcaattaaatagttgttagcacttaggagttgggagaaatcatttacaaaattgtaattaat 19314448  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 304
Target Start/End: Original strand, 9883718 - 9883764
Alignment:
Q  258 taaatagtttttagcatttaggagtttcaagaagtcatttataaaat 304  Q
    |||||||||||||||||||| ||||| ||||||| ||||||||||||    
T  9883718 taaatagtttttagcatttatgagttgcaagaagccatttataaaat 9883764  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 304
Target Start/End: Original strand, 9260956 - 9261005
Alignment:
Q  255 aattaaatagtttttagcatttaggagtttcaagaagtcatttataaaat 304  Q
    ||||||||||||||||||| ||| | ||| ||||||| ||||||||||||    
T  9260956 aattaaatagtttttagcacttatgtgttgcaagaagccatttataaaat 9261005  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 304
Target Start/End: Complemental strand, 31967453 - 31967396
Alignment:
Q  247 ttaatttcaattaaatagtttttagcatttaggagtttcaagaagtcatttataaaat 304  Q
    |||| ||||||||||||  |||||||| |||||||||  |||||| ||||||||||||    
T  31967453 ttaacttcaattaaataagttttagcacttaggagttctaagaagccatttataaaat 31967396  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 314
Target Start/End: Original strand, 3025511 - 3025579
Alignment:
Q  245 ttttaatttcaattaaatagtttttagcatttaggagtttcaagaagtcatttataaaatattaattaat 314  Q
    |||||| || |||||||||||| |||||||||||||||| ||| ||  ||||||||||||  ||||||||    
T  3025511 ttttaactttaattaaatagttgttagcatttaggagttgcaa-aaaccatttataaaattgtaattaat 3025579  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 306
Target Start/End: Complemental strand, 30956977 - 30956929
Alignment:
Q  258 taaatagtttttagcatttaggagtttcaagaagtcatttataaaatat 306  Q
    |||||||||||||||||||||||||| ||| |   ||||||||||||||    
T  30956977 taaatagtttttagcatttaggagttccaatagaccatttataaaatat 30956929  T

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