View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11904_high_14 (Length: 310)
Name: NF11904_high_14
Description: NF11904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11904_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 28448128 - 28447982
Alignment:
| Q |
1 |
catcgatgtagaggggaggtctgtaggcctgacgcctatagaaatagacaaccactccaacaaaagattgaaggccgtaacttccaacgcacaaaatagg |
100 |
Q |
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| T |
28448128 |
catcgatgtagaggggaggtctgtaggtctgatgcctatagaaatagacaaccactccaacaaaagattgaaggccgtaacttccaacgcacaaaatagg |
28448029 |
T |
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| Q |
101 |
aaccccagagagaggaacaccgaagccaaggccagccaaagcccaaa |
147 |
Q |
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| T |
28448028 |
aaccccagagagaggaacaccgaagccaaggccagccaaagcccaaa |
28447982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 67 - 144
Target Start/End: Complemental strand, 18690684 - 18690607
Alignment:
| Q |
67 |
attgaaggccgtaacttccaacgcacaaaataggaaccccagagagaggaacaccgaagccaaggccagccaaagccc |
144 |
Q |
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|||||||| ||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
18690684 |
attgaaggttgtaacttccaacgcaaaaactaggaacctcagagagaggaacaccgaagccaaggccaaccaaagccc |
18690607 |
T |
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