View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11904_high_4 (Length: 404)
Name: NF11904_high_4
Description: NF11904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11904_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 29 - 335
Target Start/End: Original strand, 9130741 - 9131047
Alignment:
| Q |
29 |
aaaaagacatccagacggaccactgatctgctgcagctggactcctcttcaatcattctcccggatcccaactccattcatagaataaccgagggctccc |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
9130741 |
aaaaagacatccagacggaccactgatctgctgcagctagactcctcttcaatcattctcccgaatcccaactccattcatagaataaccaagggctccc |
9130840 |
T |
|
| Q |
129 |
ctttaaacggctaagactccatttcaaagataacactttgatctcatccacaatatcctcacaatctctagccaaattcttgacgatcttttcattccta |
228 |
Q |
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|||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9130841 |
ctttaagcgggtaagactccatttcaaagataacaccttgatctcatccacaatatcctcacaatctctagccaaattcttgacgatcttttcattccta |
9130940 |
T |
|
| Q |
229 |
gccttccaaagaacccaaataacggagtgccatattaaccaataacccctctttgatatcaccaatgaacctttctagttgcaaaaacaaactacttggt |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9130941 |
gccttccaaagaacccaaataacggagtgccatattaaccaataacccctctttgatatcaccaatgaacctttctagttgcaaaaacaaactacttggt |
9131040 |
T |
|
| Q |
329 |
ctaataa |
335 |
Q |
| |
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||||||| |
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|
| T |
9131041 |
ctaataa |
9131047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 29 - 335
Target Start/End: Original strand, 9122645 - 9122940
Alignment:
| Q |
29 |
aaaaagacatccagacggaccactgatctgctgcagctggactcctcttcaatcattctcccggatcccaactccattcatagaataaccgagggctccc |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
9122645 |
aaaaagacatccagacggaccactgatctgctgcagctcgactcctcttcaatcattctcccggatctcaactccattcatagaataaccaagggctccc |
9122744 |
T |
|
| Q |
129 |
ctttaaacggctaagactccatttcaaagataacactttgatctcatccacaatatcctcacaatctctagccaaattcttgacgatcttttcattccta |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
9122745 |
ctttaaacggctaagactccatttcaaagataacactttgatctcatcgacaa-----------tctctagccaaattcttgacgatcttttcattccta |
9122833 |
T |
|
| Q |
229 |
gccttccaaagaacccaaataacggagtgccatattaaccaataacccctctttgatatcaccaatgaacctttctagttgcaaaaacaaactacttggt |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9122834 |
gccttccaaagaacccaaataacggagtgccatattaaccaataacccctctttgatatcaccaatgaacctttctagttgcaaaaacaaactacttggt |
9122933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 381
Target Start/End: Original strand, 9123039 - 9123086
Alignment:
| Q |
334 |
aaacatcaaataaagacattggcagtaatatctacaagagtaactgat |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||||||||| |
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|
| T |
9123039 |
aaacatcaaataaagacattggcagtaataactataagagtaactgat |
9123086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 381
Target Start/End: Original strand, 9131146 - 9131193
Alignment:
| Q |
334 |
aaacatcaaataaagacattggcagtaatatctacaagagtaactgat |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||||||||| |
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|
| T |
9131146 |
aaacatcaaataaagacattggcagtaataactataagagtaactgat |
9131193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 29 - 319
Target Start/End: Original strand, 24524595 - 24524885
Alignment:
| Q |
29 |
aaaaagacatccagacggaccactgatctgctgcagctggactcctcttcaatcattctcccggatcccaactccattcatagaataaccgagggctccc |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
24524595 |
aaaaagacatccagacggaccactgatctgctgcagctggactcctcttcaatcattctcccgaatcccaactccattcatagaataaccaagggctccc |
24524694 |
T |
|
| Q |
129 |
ctttaaacggctaagactccatttcaaagataacactttgatctcatccacaatatcctcacaatctctagccaaattcttgacgatcttttcattccta |
228 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24524695 |
ctttaagcgggtaagactccatttcaaagataacaccttgatctcatccacaatatcctcacaatctctagccaaattcttgacgatcttttcattccta |
24524794 |
T |
|
| Q |
229 |
gccttccaaagaacccaaataacggagtgccatattaaccaataacccctctttgatatcaccaatgaacctttctagttgcaaaaacaaa |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24524795 |
gccttccaaagaacccaaataacggagtgccatattaaccaataacccctctttgatatcagcaatgaacctttctagttgcaaaaacaaa |
24524885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 120 - 282
Target Start/End: Original strand, 10323138 - 10323301
Alignment:
| Q |
120 |
agggctcccctttaaacggctaagactccatttcaaagataacactttgatctcatccacaatatcctcacaatctctagccaaattcttgacgatcttt |
219 |
Q |
| |
|
|||||||||||||||| ||| |||||| |||| | | || |||| ||||| |||||||||||||||| |||||||||||||||||| |||| ||| ||| |
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|
| T |
10323138 |
agggctcccctttaaatggcaaagacttcattaccatgacaacatcttgatttcatccacaatatccttacaatctctagccaaattgttgatgattttt |
10323237 |
T |
|
| Q |
220 |
t-cattcctagccttccaaagaacccaaataacggagtgccatattaaccaataacccctcttt |
282 |
Q |
| |
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|||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
10323238 |
cgcatttctagccttccaaagaaccaaaataacggagtgccaaattaaccaataacccctcttt |
10323301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 10323081 - 10323126
Alignment:
| Q |
29 |
aaaaagacatccagacggaccactgatctgctgcagctggactcct |
74 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
10323081 |
aaaatgacatccagacggaccacttatctgcttcagctggactcct |
10323126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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