View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11904_high_5 (Length: 384)
Name: NF11904_high_5
Description: NF11904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11904_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 3 - 366
Target Start/End: Complemental strand, 23004868 - 23004500
Alignment:
| Q |
3 |
tcaccttctgaggacctccataacttaaatgatttatccacctcctgttaaatgctaaaaagttcaggaaaaaagtataggctgatgctgaaataattat |
102 |
Q |
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| T |
23004868 |
tcaccttctgaggacctccataacttaaatgatttatccacctcctgttaaatgctaaaaatttcaggaaaaaagtataggctgatgctgaaataattat |
23004769 |
T |
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| Q |
103 |
ggcacattggtatgtcgataatactttgtcaactgtataccggtatcgagatgcaggagacttgaacttcagtaaaactagnnnnnnnn-----tcgcta |
197 |
Q |
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|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
23004768 |
ggcacactggtatgtcgataatactttgtcaagtgtataccggtatcgagatgcaggagacttgaacttcagtaaaattagaaagaaagaaaaatcgcta |
23004669 |
T |
|
| Q |
198 |
tttcaccatactgtgtcaaagatgatgcataacacataatgtgcacacaactactaatgtttatactcactttctgacacagactacgagcatccaacta |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23004668 |
tttcaccatactgtgtcaaagatgatgcataacacataatgtgcacacaaatactattgtttatactcactttctgacacagactacgagcatccaacta |
23004569 |
T |
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| Q |
298 |
acatgattgatttattaaaaaatacacgtctagccatcaaacaagaattcttaagctatctgatgatgt |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23004568 |
acatgattgatttattaaaaaatacacgtctagccatcaaacaagaattcttaagctatctgatgatgt |
23004500 |
T |
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