View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11904_high_9 (Length: 348)
Name: NF11904_high_9
Description: NF11904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11904_high_9 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 87 - 348
Target Start/End: Complemental strand, 42639429 - 42639168
Alignment:
| Q |
87 |
tgtgatattaatgttgtgcagatttttgctatactgaagagattgatggtccatcaaaggactactgtgatgaaagcaacacagagtggccatgtgcccc |
186 |
Q |
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| T |
42639429 |
tgtgatattaatgttgtgcagatttttgctatactgaagagattgatggtccatcaaaggactactgtgatgaaggcaacacagagtggccatgtgcccc |
42639330 |
T |
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| Q |
187 |
taacaaaggttactatggtcgtggaccgattcaactttcttggaactacaactatggaccagctggaagagacaatggttttgatggattgaactcacct |
286 |
Q |
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| T |
42639329 |
taacaaaggttactatggtcgtggaccgattcaactatcttggaactacaactatggaccagctggaagagacaatggttttgatggattgaactcacct |
42639230 |
T |
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| Q |
287 |
gaaacagtggccaatgatcctacagtgtccttcaagacagcattatggtattggatgaataa |
348 |
Q |
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| T |
42639229 |
gaaacagtggccaatgatcctacagtgtccttcaagacagcattatggtattggatgaataa |
42639168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 103 - 346
Target Start/End: Complemental strand, 42634336 - 42634093
Alignment:
| Q |
103 |
tgcagatttttgctatactgaagagattgatggtccatcaaaggactactgtgatgaaagcaacacagagtggccatgtgcccctaacaaaggttactat |
202 |
Q |
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| T |
42634336 |
tgcagatttttgctatatagaagagaaggatggtgcatcaaaggactactgcgatgaaagcaacacagagtacccgtgtgcccctaacaaaggatactat |
42634237 |
T |
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| Q |
203 |
ggtcgtggaccgattcaactttcttggaactacaactatggaccagctggaagagacaatggttttgatggattgaactcacctgaaacagtggccaatg |
302 |
Q |
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| T |
42634236 |
ggccgtggaccgattcaattatcttggaactttaattacggaccagctggaaaggacagtggttttgatgaattgaactctcctgaaacagtggccaatg |
42634137 |
T |
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| Q |
303 |
atcctacagtgtccttcaagacagcattatggtattggatgaat |
346 |
Q |
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| T |
42634136 |
atcctttagtgtccttcaagacagcattatggtattggatgaat |
42634093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 87 - 220
Target Start/End: Complemental strand, 42628785 - 42628651
Alignment:
| Q |
87 |
tgtgatattaatgttg-tgcagatttttgctatactgaagagattgatggtccatcaaaggactactgtgatgaaagcaacacagagtggccatgtgccc |
185 |
Q |
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| T |
42628785 |
tgtgaaattaatgttgatgcagatttctgctatactgaagagattgatggtgcatcataagactactgtgatgaaagcaatgcagagtacacatgtgccc |
42628686 |
T |
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| Q |
186 |
ctaacaaaggttactatggtcgtggaccgattcaa |
220 |
Q |
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| T |
42628685 |
ctaacaaagggttctatggttgtggaccgattcaa |
42628651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 257 - 307
Target Start/End: Complemental strand, 42628638 - 42628588
Alignment:
| Q |
257 |
gacaatggttttgatggattgaactcacctgaaacagtggccaatgatcct |
307 |
Q |
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| T |
42628638 |
gacaatggttctgatggattgaactctcctgaaacagtggccaatgatcct |
42628588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 3855632 - 3855697
Alignment:
| Q |
1 |
gataggaggctgtctgtcaaagataaaggacttcgccattgatatataaagattataggcgtcttg |
66 |
Q |
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| T |
3855632 |
gataggaggctgtctgtcaaagataaaggacttcgccattgatatataaagattataggcgtcttg |
3855697 |
T |
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