View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11905_high_8 (Length: 255)
Name: NF11905_high_8
Description: NF11905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11905_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 24532175 - 24531953
Alignment:
| Q |
19 |
caggggtcttgaaagtggtcttgtaccaagtcattggtactcctgtagaaacattacgtggtatccatggaactccattagatttgggatcatagaactt |
118 |
Q |
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| T |
24532175 |
caggggtcttgaaagtggtcttgtaccaagtcattggtactcctatagaaacattacgtggtatccatggaactccattagatttgggatcatagaactt |
24532076 |
T |
|
| Q |
119 |
tctagccataccattcatcccaactttgtatgaccaagtagattttgataaatccaaaacattgtctggatattcaattgaaatgagtttcacataaccc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
24532075 |
tctagccataccattcatcccaactttgtatgaccaagtagattttgataaatccaaaacattgtctggatattcaattgaaatgagtttaacatgaccc |
24531976 |
T |
|
| Q |
219 |
ccaacaataccagtttctttcat |
241 |
Q |
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||||||||||||||||||||||| |
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| T |
24531975 |
ccaacaataccagtttctttcat |
24531953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 241
Target Start/End: Complemental strand, 24525502 - 24525280
Alignment:
| Q |
20 |
aggggtcttgaaagtggtcttgtaccaagtcattggtactcctgtagaaacattacgtggtatccatggaactccattagatttgggatcatagaacttt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
24525502 |
aggggtcttgaaagtggtcttgtaccaagtcattggtactcctgtagaaacattacgtggtatccatggaactccattagatctgggatcttagaacttt |
24525403 |
T |
|
| Q |
120 |
ctagccataccattcatcccaactttgtatgaccaagtagattttgataaatccaaaacattgtctggatattcaattgaaatgagtttcacat-aaccc |
218 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
24525402 |
ctagccataccattcatcccaactttgtacgaccaagtagattttgataaatccaaaacattgtctggatattcaattgaaatgagtttcacatgacccc |
24525303 |
T |
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| Q |
219 |
ccaacaataccagtttctttcat |
241 |
Q |
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||||||||||||||||||||||| |
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| T |
24525302 |
ccaacaataccagtttctttcat |
24525280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 290451 - 290226
Alignment:
| Q |
19 |
caggggtcttgaaagtggtcttgtaccaagtcattggtactcctgtagaaacattacgtggtatccatggaactccatt---agatttgggatcatagaa |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| || || ||||||||||||||| | |||||||||| |||| |||||||||||||||||| |
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| T |
290451 |
caggggtcttgaaagtggtcttgtaccaagtcattggtccttctatagaaacattacgtgtttgccatggaactacattggtagatttgggatcatagaa |
290352 |
T |
|
| Q |
116 |
ctttctagccataccattcatcccaactttgtatgaccaagtagattttgataaatccaaaacattgtctggatattcaattgaaatgagtttcacataa |
215 |
Q |
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|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| || | |
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| T |
290351 |
ctttctagccacaccattcatcccaactttgtatgaccaagtagattttgataaatccaaaacattgtttggatattcagttgaaatgagtttcgcagga |
290252 |
T |
|
| Q |
216 |
cccccaacaataccagtttctttcat |
241 |
Q |
| |
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|| ||||||||||||||||||||||| |
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|
| T |
290251 |
ccgccaacaataccagtttctttcat |
290226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 280006 - 279785
Alignment:
| Q |
19 |
caggggtcttgaaagtggtcttgtaccaagtcattggtactcctgtagaaacattacgtggtatccatggaactccattaga---tttgggatcatagaa |
115 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||| || | ||||| |||||||| | | ||||||||||||||| |
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| T |
280006 |
caggggtcttgaaagtagtcttataccaagtcattggtactcctatagaaacattatttgttttccattgaactccaatggtggttttgggatcatagaa |
279907 |
T |
|
| Q |
116 |
ctttctagccataccattcatcccaactttgtatgaccaagtagattttgataaatccaaaacattgtctggatattcaattgaaatgagtttcacataa |
215 |
Q |
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|||| ||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||| ||||||| |||||| ||| | |
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| T |
279906 |
ctttttagtcataccatttatcccaactttgtacgaccaagtagattttgataaatccaaaacattgtttggattttcgattgaaaagagttttacagga |
279807 |
T |
|
| Q |
216 |
cccccaacaataccagtttctt |
237 |
Q |
| |
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||||||||||| |||||||||| |
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| T |
279806 |
cccccaacaatgccagtttctt |
279785 |
T |
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