View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11905_low_13 (Length: 248)

Name: NF11905_low_13
Description: NF11905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11905_low_13
NF11905_low_13
[»] chr7 (2 HSPs)
chr7 (17-233)||(24065217-24065433)
chr7 (122-211)||(8847595-8847683)
[»] chr3 (3 HSPs)
chr3 (17-233)||(24674303-24674519)
chr3 (23-213)||(3137775-3137965)
chr3 (154-211)||(4648325-4648381)
[»] chr8 (3 HSPs)
chr8 (18-204)||(25241930-25242120)
chr8 (38-213)||(15939444-15939619)
chr8 (92-204)||(3947522-3947633)
[»] chr5 (3 HSPs)
chr5 (41-204)||(32569493-32569656)
chr5 (158-213)||(38629702-38629757)
chr5 (44-121)||(38629765-38629842)
[»] chr1 (1 HSPs)
chr1 (31-204)||(8754373-8754546)
[»] chr2 (2 HSPs)
chr2 (144-204)||(37673541-37673601)
chr2 (130-205)||(15913627-15913702)


Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 233
Target Start/End: Complemental strand, 24065433 - 24065217
Alignment:
Q  17 gaacaaaataaagatacttctcctagtttacttgagttacaagctagctagttatacttagtttaatctagtagattagcatgtgattaggcttaatgta 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24065433 gaacaaaataaagatacttctcctagtttacttgagttacaagctagctagttatacttagtttaatctagtagattagcatgtgattaggcttaatgta 24065334  T
Q  117 ctttacatattgcctataaatactctatgtactcacttttacatctatgagaaatgagactattttctattctttgctttccataacatggtatctatag 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24065333 ctttacatattgcctataaatactctatgtactcacttttacatctatgagaaatgagactattttctattttttgctttccataacatggtatctatag 24065234  T
Q  217 tttttcttcccatttcc 233  Q
    |||||||||||||||||    
T  24065233 tttttcttcccatttcc 24065217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 211
Target Start/End: Original strand, 8847595 - 8847683
Alignment:
Q  122 catattgcctataaatactctatgtactcacttttacatctatgagaaatgagactattttctattctttgctttccataacatggtatc 211  Q
    ||||||||||||||||| |   ||||  ||| || ||||||||||||||||||| | ||||| ||| ||||||| |||||||||||||||    
T  8847595 catattgcctataaatattgcttgtatacacattcacatctatgagaaatgagatttttttc-attatttgcttcccataacatggtatc 8847683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 161; Significance: 6e-86; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 17 - 233
Target Start/End: Original strand, 24674303 - 24674519
Alignment:
Q  17 gaacaaaataaagatacttctcctagtttacttgagttacaagctagctagttatacttagtttaatctagtagattagcatgtgattaggcttaatgta 116  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||    
T  24674303 gaacaaaataaagatacttctcctagattgcttgagttacaagctagctagttatacttagtttaatatagtagattagcatgtgactaggtttaatgta 24674402  T
Q  117 ctttacatattgcctataaatactctatgtactcacttttacatctatgagaaatgagactattttctattctttgctttccataacatggtatctatag 216  Q
    ||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||| ||    
T  24674403 ctttacatattgcatataaataccctatgtactcactttcacatctatgagaaatgagcctattttctcttctttgctttccataagatggtatctagag 24674502  T
Q  217 tttttcttcccatttcc 233  Q
     |||||||| |||||||    
T  24674503 cttttcttctcatttcc 24674519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 23 - 213
Target Start/End: Complemental strand, 3137965 - 3137775
Alignment:
Q  23 aataaagatacttctcctagtttacttgagttacaagctagctagttatacttagtttaatctagtagattagcatgtgattaggcttaatgtactttac 122  Q
    |||||| | |||||||||||||||||||||||||||||||||||||  ||||||| |||||| ||| ||||| ||||| |||||||||||||||||||||    
T  3137965 aataaacacacttctcctagtttacttgagttacaagctagctagtcttacttagcttaatcaagttgattaacatgtcattaggcttaatgtactttac 3137866  T
Q  123 atattgcctataaatactctatgtactcacttttacatctatgagaaatgagactattttctattctttgctttccataacatggtatcta 213  Q
    ||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  3137865 atattgcctataaatactgaatgtactcactttcacatctatgagaaatgagactattttctatttcttgctttccataacatggtatcta 3137775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 4648381 - 4648325
Alignment:
Q  154 tttacatctatgagaaatgagactattttctattctttgctttccataacatggtatc 211  Q
    |||||||||||||||||||||| |  |||| ||| ||||||| |||||||||||||||    
T  4648381 tttacatctatgagaaatgagattcatttc-attatttgcttcccataacatggtatc 4648325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 25242120 - 25241930
Alignment:
Q  18 aacaaaataaagatacttctcctagtttacttgagttacaagctagctagttatacttagtttaatctagtagattagcatgtgattaggcttaatgtac 117  Q
    ||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  25242120 aacaaaataaagagacttcacctagattacttgagttacaagctagctagttataattagtttaatctagtagattaacatgtgattaggcttaatgtac 25242021  T
Q  118 tttacatattgcctataaatac----tctatgtactcacttttacatctatgagaaatgagactattttctattctttgctttccataaca 204  Q
    ||||||||||| ||| ||||||    || ||||||| ||||| ||||||||||||||||||||||||||||||| ||| |||||| |||||    
T  25242020 tttacatattgactaaaaataccgtatcaatgtacttactttcacatctatgagaaatgagactattttctattattttctttccgtaaca 25241930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 213
Target Start/End: Original strand, 15939444 - 15939619
Alignment:
Q  38 cctagtttacttgagttacaagctagctagttatacttagtttaatctagtagattagcatgtgattaggcttaatgtactttacatattgcctataaat 137  Q
    ||||||||||||||| ||||||||||||||||| ||||| | || |||   | |||||  ||| |||||||| | |||| | |||   ||| ||||||||    
T  15939444 cctagtttacttgagatacaagctagctagttacacttactatactctcccatattagtgtgtaattaggctaattgtaatatactagttgtctataaat 15939543  T
Q  138 actctatgt-actcacttttacatctatgagaaatgagactattttctattctttgctttccataacatggtatcta 213  Q
    |||  || | |||||| ||| |||||||||| |||||||||||| |  |||  || |||||||||||||||||||||    
T  15939544 acttgatctaactcacatttccatctatgag-aatgagactattattcatttcttactttccataacatggtatcta 15939619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 204
Target Start/End: Original strand, 3947522 - 3947633
Alignment:
Q  92 ttagcatgtgattaggcttaatgtactttacatattgcctataaatactctatgtactcacttttacatctatgagaaatgagactattttctattcttt 191  Q
    |||||||||  |||| |||| |||||||||||| ||||||||||| ||   |||||   ||||| |||||||||||||||||||  |||||| |  ||||    
T  3947522 ttagcatgtacttagtcttattgtactttacattttgcctataaaaacataatgtaactactttcacatctatgagaaatgagatcattttc-acacttt 3947620  T
Q  192 gctttccataaca 204  Q
    || ||||||||||    
T  3947621 gcattccataaca 3947633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 41 - 204
Target Start/End: Original strand, 32569493 - 32569656
Alignment:
Q  41 agtttacttgagttacaagctagctagttatacttagtttaatctagtagattagcatgtgattaggcttaatgtactttacatattgcctataaatact 140  Q
    ||||||||||||| |||||||| |||||  || ||||||| |||||||  ||||||||||||||||| |  ||||||||||||| ||| ||||||||||     
T  32569493 agtttacttgagtcacaagctatctagtcttaattagtttgatctagtgtattagcatgtgattaggttctatgtactttacattttgtctataaataca 32569592  T
Q  141 ctatgtactcacttttacatctatgagaaatgagactattttctattctttgctttccataaca 204  Q
    |  ||||||| ||||| ||||||||||||||||||||| |||||||  ||| ||||||||||||    
T  32569593 cattgtactccctttttcatctatgagaaatgagactactttctatcttttactttccataaca 32569656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 213
Target Start/End: Complemental strand, 38629757 - 38629702
Alignment:
Q  158 catctatgagaaatgagactattttctattctttgctttccataacatggtatcta 213  Q
    |||||||||||||||||||||||||||||  || ||||| ||||||||||||||||    
T  38629757 catctatgagaaatgagactattttctatctttagcttttcataacatggtatcta 38629702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 121
Target Start/End: Complemental strand, 38629842 - 38629765
Alignment:
Q  44 ttacttgagttacaagctagctagttatacttagtttaatctagtagattagcatgtgattaggcttaatgtacttta 121  Q
    |||||||||| |||||||||||| |  || |||| ||||| ||||  ||||||||||||||||| ||  |||||||||    
T  38629842 ttacttgagtcacaagctagctactattaattagcttaatttagtgtattagcatgtgattaggatttgtgtacttta 38629765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 31 - 204
Target Start/End: Original strand, 8754373 - 8754546
Alignment:
Q  31 tacttctcctagtttacttgagttacaagctagctagttatacttagtttaatctagtagattagcatgtgattaggcttaatgtactttacatattgcc 130  Q
    |||||| || ||||||||||||| ||||||||||||||  || |||||||||||||||  ||||||||||||||||| ||  ||||||||| |  || ||    
T  8754373 tacttcaccaagtttacttgagtcacaagctagctagtattaattagtttaatctagtgtattagcatgtgattaggatttgtgtactttatacttttcc 8754472  T
Q  131 tataaatactcta-tgtactcacttttacatctatgagaaatgagactattttctattctttgctttccataaca 204  Q
    ||||||||| ||| ||||||  ||||| |||||||||||||||||||||||||||||  || |||||||||||||    
T  8754473 tataaatac-ctattgtactatctttttcatctatgagaaatgagactattttctatctttagctttccataaca 8754546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 37673601 - 37673541
Alignment:
Q  144 tgtactcacttttacatctatgagaaatgagactattttctattctttgctttccataaca 204  Q
    |||||||||||| |||||||||||||||||||||||||||||||  ||||||||| |||||    
T  37673601 tgtactcactttcacatctatgagaaatgagactattttctatttcttgctttccgtaaca 37673541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 205
Target Start/End: Complemental strand, 15913702 - 15913627
Alignment:
Q  130 ctataaatactctatgtactcacttttacatctatgagaaatgagactattttctattctttgctttccataacat 205  Q
    ||||||||||||||||||||| |||| |||||||||| ||||||  |||||||| |||  |  |||||||||||||    
T  15913702 ctataaatactctatgtactctctttcacatctatgacaaatgaagctattttccatttctcactttccataacat 15913627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University