View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11905_low_16 (Length: 239)
Name: NF11905_low_16
Description: NF11905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11905_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 7 - 223
Target Start/End: Complemental strand, 42010471 - 42010261
Alignment:
| Q |
7 |
aaagaaagttgcatagccagttgataaagcaagaagaagatagcataccttgattggagggactagggaaacattcaacttgaagcctatttctattttc |
106 |
Q |
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| T |
42010471 |
aaagaaagttgcatagccagttgataaagcaagaagaagatagcataccttgattggagggactagggaaacattcaacttgaagcctattttcat---c |
42010375 |
T |
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| Q |
107 |
atcctcagagaacccacaaacttgaccatcaagtaaacagtctccacatcgtggtttggtccaaaccaactcaacatcactatcaagattaggccaaaat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
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| T |
42010374 |
ctcctcagagaacccacaaacttgaccatcaagtaaacagtctccacatcgtggtttggtccaaaccaactcaacatcactttcaagattaggcc---at |
42010278 |
T |
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| Q |
207 |
ggccacatagaaatatc |
223 |
Q |
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|||||||||| |||||| |
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| T |
42010277 |
ggccacataggaatatc |
42010261 |
T |
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