View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11905_low_2 (Length: 564)
Name: NF11905_low_2
Description: NF11905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11905_low_2 |
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| [»] chr3 (3 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 491; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 18 - 564
Target Start/End: Complemental strand, 290322 - 289776
Alignment:
| Q |
18 |
tgtatgaccaagtagattttgataaatccaaaacattgtctggatattcagttgaaatgagtttcgcaggaccgccaacaataccagtttctttcatatc |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
290322 |
tgtatgaccaagtagattttgataaatccaaaacattgtttggatattcagttgaaatgagtttcgcaggaccgccaacaataccagtttctttcatatc |
290223 |
T |
|
| Q |
118 |
aatgtacccactacaatttgatttgccaagtgtaacacttaacaaacttataatattggcacctcgtttcaaagaaacatcctcttcatatacgaaacca |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
290222 |
aatgtacccactacaatttgatttgccaagtgtaacacttaacaaacttataatattggcaccttgtttcaaagaaacatcctcttcatatacaaaacca |
290123 |
T |
|
| Q |
218 |
ggtttactcgggctaccaccttctacaccccaccagaatccattaatatatgaataaagaataggaccttttgtatcgacgtgcagccttgctttccccc |
317 |
Q |
| |
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|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
290122 |
ggtttactcgggctaccaccttctacgccccaccaaaatccattaatatatgaataaagaataggaccttttgtatcgacgtgcagccttgcttttcccc |
290023 |
T |
|
| Q |
318 |
aaatttttgtgtcatttacgactacttcggtcatgtaccataaataatcactagttccagcagtaacattcttttgatctaaaagtttagatgcagtaaa |
417 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
290022 |
aaatttttgtgtcatttacgactacttcggtcatgtaccataaataatcactagctccagcggtaacattcttttgatttaaaagtttagatgcagtaaa |
289923 |
T |
|
| Q |
418 |
tgtccctctgcctagtaatgtgtcttgcattggttcggatgcccattcccacttgagtgtgtttcctgatgaacaagtacacaacaatgataaacatgca |
517 |
Q |
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||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
289922 |
tgtccctttgcctagtaaggtgtcttgcattggttcggatgcccattcccacttgagtgtgtttcctaatgaacaagtacacaacaatgctaaacatgca |
289823 |
T |
|
| Q |
518 |
gtaagaaatatactaaacctaggattagacatatttttcaaacatgc |
564 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
289822 |
gtaagaaatatactaaaccttggattagacatatttttcaaacatgc |
289776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 18 - 463
Target Start/End: Complemental strand, 279877 - 279432
Alignment:
| Q |
18 |
tgtatgaccaagtagattttgataaatccaaaacattgtctggatattcagttgaaatgagtttcgcaggaccgccaacaataccagtttctttcatatc |
117 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||| ||||| ||| |||||| |||||| ||||||| |||||||| |||||||||| |||||| |
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| T |
279877 |
tgtacgaccaagtagattttgataaatccaaaacattgtttggattttcgattgaaaagagttttacaggacccccaacaatgccagtttcttgcatatc |
279778 |
T |
|
| Q |
118 |
aatgtacccactacaatttgatttgccaagtgtaacacttaacaaacttataatattggcacctcgtttcaaagaaacatcctcttcatatacgaaacca |
217 |
Q |
| |
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|| | || ||| |||||| | || | |||||||||||| |||||||||||||||| |||| | || ||||| | | | |||||| || |||||| |
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| T |
279777 |
aaagaacgcaccgtaatttgcatgacctactgtaacacttaataaacttataatattggtaccttgatttaaagagatgttcccttcatgtataaaacca |
279678 |
T |
|
| Q |
218 |
ggtttactcgggctaccaccttctacaccccaccagaatccattaatatatgaataaagaataggaccttttgtatcgacgtgcagccttgctttccccc |
317 |
Q |
| |
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|||| ||| | ||||| || | |||| | | |||||||||||| || ||||||||||| ||||| |||||| || |||| | |||||||||||| |
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| T |
279677 |
ggttgactaacggtaccatgttgtgtacccgtcaaaaatccattaataaataaataaagaatatgacctgttgtattcacttgcacctttgctttccccc |
279578 |
T |
|
| Q |
318 |
aaatttttgtgtcatttacgactacttcggtcatgtaccataaataatcactagttccagcagtaacattcttttgatctaaaagtttagatgcagtaaa |
417 |
Q |
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|| | ||||| ||||||||||| ||||||||||||||||| || |||||||||| ||| | |||||| |||||||||||||||||| |||||||||||| |
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| T |
279577 |
aagtgtttgtatcatttacgacaacttcggtcatgtaccacaagtaatcactagcaccaacggtaacactcttttgatctaaaagttgagatgcagtaaa |
279478 |
T |
|
| Q |
418 |
tgtccctctgcctagtaatgtgtcttgcattggttcggatgcccat |
463 |
Q |
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||||||| | ||| | || ||||||| |||||| ||||||| |||| |
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| T |
279477 |
tgtccctttaccttgaaaagtgtcttccattgggtcggatgtccat |
279432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 554
Target Start/End: Complemental strand, 278179 - 278108
Alignment:
| Q |
483 |
ctgatgaacaagtacacaacaatgataaacatgcagtaagaaatatactaaacctaggattagacatatttt |
554 |
Q |
| |
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||||||||||||| ||||||||| ||| |||||| |||||||| | | |||| ||| |||||||||||||| |
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| T |
278179 |
ctgatgaacaagtgtacaacaatgctaagcatgcaataagaaatgtcccaaacatagcattagacatatttt |
278108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 564
Target Start/End: Complemental strand, 24525377 - 24524830
Alignment:
| Q |
18 |
tgtatgaccaagtagattttgataaatccaaaacattgtctggatattcagttgaaatgagtttcgcaggaccgcc-aacaataccagtttctttcatat |
116 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||| || ||||||||||||||||||||||| |
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| T |
24525377 |
tgtacgaccaagtagattttgataaatccaaaacattgtctggatattcaattgaaatgagtttcacatgaccccccaacaataccagtttctttcatat |
24525278 |
T |
|
| Q |
117 |
caatgtacccactacaatttgatttgccaagtgtaacacttaacaaacttataatattggcacctcgtttcaaagaaacatcctcttcatatacgaaacc |
216 |
Q |
| |
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||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||| |||| |||||| ||||||||||||| |
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| T |
24525277 |
caatgaacccactacaatttgatttaccaagtgtaacacttaataaacttataatattggtacctcgtttcaaggaaatatcctcatcatatacgaaact |
24525178 |
T |
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| Q |
217 |
aggtttactcgggctaccaccttctacaccccaccagaatccattaatatatgaataaagaataggaccttttgtatcgacgtgcagccttgctttcccc |
316 |
Q |
| |
|
| || |||||||| ||| | | | |||||||||||| |||||||||||||||||||||| |||||| ||||||| || || ||||| ||| ||||||| |
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|
| T |
24525177 |
atgtgtactcgggatactatcatatacaccccaccaaaatccattaatatatgaataaataatagggccttttgcattcacttgcagtgttgatttcccc |
24525078 |
T |
|
| Q |
317 |
caaatttttgtgtcatttacgactacttcggtcatgtaccataaataatcactagttccagcagtaacattcttttgatctaaaagtttagatgcagtaa |
416 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24525077 |
caaacagttgtgtcatttacgactacttcggtcatgtaccataaataatcactagctccagcagtaacattcttttgatctaaaagtttagatgcagtaa |
24524978 |
T |
|
| Q |
417 |
atgtccctctgcctagtaatgtgtcttgcattggttcggatgcccattcccacttgagtgtgtttcctgatgaacaagtacacaacaatgataaacatgc |
516 |
Q |
| |
|
|||||||| ||||| |||| ||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||| |||| ||||||||| |
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| T |
24524977 |
atgtccctttgcctggtaaggtgtcttgcattggttcagatgcccattcccacttgagtgggtttcctaatgaacaagtacacaataatgctaaacatgc |
24524878 |
T |
|
| Q |
517 |
agtaagaaatatactaaacctaggattagacatatttttcaaacatgc |
564 |
Q |
| |
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|||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
24524877 |
agtaagaaatgtacgaaacctaggattagacatatttttcaaacatgc |
24524830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 18 - 564
Target Start/End: Complemental strand, 24532049 - 24531503
Alignment:
| Q |
18 |
tgtatgaccaagtagattttgataaatccaaaacattgtctggatattcagttgaaatgagtttcgcaggaccgccaacaataccagtttctttcatatc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||| |||||||||||||||||||||||||| |
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|
| T |
24532049 |
tgtatgaccaagtagattttgataaatccaaaacattgtctggatattcaattgaaatgagtttaacatgacccccaacaataccagtttctttcatatc |
24531950 |
T |
|
| Q |
118 |
aatgtacccactacaatttgatttgccaagtgtaacacttaacaaacttataatattggcacctcgtttcaaagaaacatcctcttcatatacgaaacca |
217 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||| |||| |||||| ||||||||||||| | |
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|
| T |
24531949 |
aatgaacccactacaatttgatttaccaagtgtaacacttaataaacttataatattggtacctcgtttcaaggaaatatcctcatcatatacgaaacta |
24531850 |
T |
|
| Q |
218 |
ggtttactcgggctaccaccttctacaccccaccagaatccattaatatatgaataaagaataggaccttttgtatcgacgtgcagccttgctttccccc |
317 |
Q |
| |
|
|| |||||||| || | | | |||||||||||| |||||||||||||| ||||||| |||||| ||||||| || || ||||| ||| |||||||| |
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| T |
24531849 |
cgtgtactcgggacactatcatatacaccccaccaaaatccattaatatacgaataaataatagggccttttgcattcacttgcagtgttgatttccccc |
24531750 |
T |
|
| Q |
318 |
aaatttttgtgtcatttacgactacttcggtcatgtaccataaataatcactagttccagcagtaacattcttttgatctaaaagtttagatgcagtaaa |
417 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24531749 |
aaacggttgtgtcatttacgactacttcggtcatgtaccataaataatcactagctccagcagtaacattcttttgatctaaaagtttagatgcagtaaa |
24531650 |
T |
|
| Q |
418 |
tgtccctctgcctagtaatgtgtcttgcattggttcggatgcccattcccacttgagtgtgtttcctgatgaacaagtacacaacaatgataaacatgca |
517 |
Q |
| |
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||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||| |||| |||||||||| |
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| T |
24531649 |
tgtcccttggcctagtaaggtgtcttgcattggttcagatgcccattcccacttgagtgggtttcctaatgaacaagtacacaataatgctaaacatgca |
24531550 |
T |
|
| Q |
518 |
gtaagaaatatactaaacctaggattagacatatttttcaaacatgc |
564 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
24531549 |
gtaagaaatgtacgaaacctaggattagacatatttttcaaacatgc |
24531503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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