View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11905_low_3 (Length: 545)
Name: NF11905_low_3
Description: NF11905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11905_low_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 5 - 545
Target Start/End: Complemental strand, 28506648 - 28506108
Alignment:
| Q |
5 |
gagtgagaagaaaaaagggtactaaattaattctactaatattattgagtttataatataactatttctctttatgcatttcaggccataacagaaatca |
104 |
Q |
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| T |
28506648 |
gagtgacatgaaaaaagggtactaaattaattctactaatattattgagtttataatataactatttctctttatgcatttcaggccataacagaaatca |
28506549 |
T |
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| Q |
105 |
aagaaataggaaaaatatcaggtccaacaacaataactggtttattgttatattcaagagctatgatatcaatgattttccttggatatcttggagagat |
204 |
Q |
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| T |
28506548 |
aagaaataggaaaaatatcaggtccaacaacaataactggtttattgttatattcaagagctatgatatcaatgattttccttggatatcttggagagat |
28506449 |
T |
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| Q |
205 |
ggaactagcaggaggttcactttcaataggctttgcaaatatcactggttactcagtgatatcaggtttagccatgggaatggaaccaatttgtggacaa |
304 |
Q |
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| T |
28506448 |
ggaactagcaggaggttcactttcaataggctttgcaaatatcactggttactcagtgatatcaggtttagccatgggaatggaaccaatttgtggacaa |
28506349 |
T |
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| Q |
305 |
gcttatggagcaaaacaatggaagatacttggcttaacacttcaaagaacagttcttcttcttctttcaacttcaatccctatctcattcatttggatca |
404 |
Q |
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| T |
28506348 |
gcttatggagcaaaacaatggaagatacttggcttaacacttcaaagaacagttcttcttcttctttcaacttcaatccctatctcattcatttggatca |
28506249 |
T |
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| Q |
405 |
atatgaaaagaatccttttgttttcaggtcaagacttagaaatttcatcaatggcacaaagttttatacnnnnnnnagtgcctgatctttttctactttc |
504 |
Q |
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| T |
28506248 |
acatgaaaagaatccttttgttttcaggtcaagacttagaaatttcatcaatggcacaaagttttatactttttttagtgcctgatctttttctactttc |
28506149 |
T |
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| Q |
505 |
agttcttcaccctttgagaatctatttaaggactcaaggaa |
545 |
Q |
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| T |
28506148 |
aattcttcaccctttgagaatctatttaaggactcaaggaa |
28506108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 145; Significance: 5e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 110 - 378
Target Start/End: Original strand, 51874289 - 51874557
Alignment:
| Q |
110 |
ataggaaaaatatcaggtccaacaacaataactggtttattgttatattcaagagctatgatatcaatgattttccttggatatcttggagagatggaac |
209 |
Q |
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| T |
51874289 |
ataggtaaaatatcaggtccaacagctataactggtttactcttatattcaagagctatgatctctatgcttttccttggctatctcggcgagacagaac |
51874388 |
T |
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| Q |
210 |
tagcaggaggttcactttcaataggctttgcaaatatcactggttactcagtgatatcaggtttagccatgggaatggaaccaatttgtggacaagctta |
309 |
Q |
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| T |
51874389 |
tagcaggaggttctctctccataggttttgcaaacataactggttattctgtcctatctggtttagccatgggaatggaacccatttgtggacaagctta |
51874488 |
T |
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| Q |
310 |
tggagcaaaacaatggaagatacttggcttaacacttcaaagaacagttcttcttcttctttcaacttc |
378 |
Q |
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| T |
51874489 |
tggagctaaacaatggaagatacttggcttaactcttcaaagaaccgttcttttacttctttccacttc |
51874557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 340
Target Start/End: Original strand, 10676353 - 10676415
Alignment:
| Q |
278 |
atgggaatggaaccaatttgtggacaagcttatggagcaaaacaatggaagatacttggctta |
340 |
Q |
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| T |
10676353 |
atgggaatggaacttatttgtggagaagctaatggagcaaagcaatggaagatgctttgctta |
10676415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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