View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11905_low_4 (Length: 414)
Name: NF11905_low_4
Description: NF11905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11905_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 189 - 395
Target Start/End: Original strand, 50984123 - 50984326
Alignment:
| Q |
189 |
ttccagtatttatagatattttttgaatgtacagaagacattacaaatgatgagcttgtacataattggtattcgagggctcctacatccatatatatac |
288 |
Q |
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| T |
50984123 |
ttccagtatttatagatattttttgaatgtacagaagacattacaaatgatgagcttgtacataattggtattcgagggctcctacatccatatatatac |
50984222 |
T |
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| Q |
289 |
tacctgacaaaagcaaattgtctaactccccatttatatctgattttaattgctgctgctgctagtatcaacacctaccaatctaaaacattcgagagag |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
50984223 |
tacctgacaaaagcaaattgtctaactccccatttatatcagattttaatggctgctgctgctagtatcaacacctaccaatctaaaacatt---gagag |
50984319 |
T |
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| Q |
389 |
gaagttg |
395 |
Q |
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||||||| |
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| T |
50984320 |
gaagttg |
50984326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 189 - 395
Target Start/End: Original strand, 51087257 - 51087460
Alignment:
| Q |
189 |
ttccagtatttatagatattttttgaatgtacagaagacattacaaatgatgagcttgtacataattggtattcgagggctcctacatccatatatatac |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51087257 |
ttccagtatttatagatattttttgaatgtacagaagacattacaaatgatgagcttgtacataattggtattcgagggctcctacatccatatatatac |
51087356 |
T |
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| Q |
289 |
tacctgacaaaagcaaattgtctaactccccatttatatctgattttaattgctgctgctgctagtatcaacacctaccaatctaaaacattcgagagag |
388 |
Q |
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| T |
51087357 |
tacctgacaaaagcaaattgtctaactccccatttatatcagattttaatggctgctgctgctagtatcaacacctaccaatctaaaacatt---gagag |
51087453 |
T |
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| Q |
389 |
gaagttg |
395 |
Q |
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||||||| |
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| T |
51087454 |
gaagttg |
51087460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 15 - 191
Target Start/End: Original strand, 50983915 - 50984091
Alignment:
| Q |
15 |
atgaatatctgcaagtgattttgttttgtgtcatgtttgacttcgttttccctgcatattttgttcttgattgtgtgctttgtttattccattttgcctt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
50983915 |
atgaatatctgcaagtgattttgttttgtgtcatgtttgacttcgttttccctgtatattttgttcttgattgtgtgctttatttattccattttgcctt |
50984014 |
T |
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| Q |
115 |
ttaataaagaaatgaaagcataaaaaatataagggtaagggggaaatgttcctttttgttccattccctttagattc |
191 |
Q |
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| T |
50984015 |
ttaataaagaaatgaaagcataaaaaatataagggtaagggggaaatgttccgttttgttccattccctttagattc |
50984091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 15 - 191
Target Start/End: Original strand, 51087049 - 51087225
Alignment:
| Q |
15 |
atgaatatctgcaagtgattttgttttgtgtcatgtttgacttcgttttccctgcatattttgttcttgattgtgtgctttgtttattccattttgcctt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
51087049 |
atgaatatctgcaagtgattttgttttgtgtcatgtttgacttcgttttccctgtatattttgttcttgattgtgtgctttatttattccattttgcctt |
51087148 |
T |
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| Q |
115 |
ttaataaagaaatgaaagcataaaaaatataagggtaagggggaaatgttcctttttgttccattccctttagattc |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
51087149 |
ttaataaagaaatgaaagcataaaaaatataagggtaagggggaaatgttccgttttgttccattccctttagattc |
51087225 |
T |
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