View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11905_low_5 (Length: 414)
Name: NF11905_low_5
Description: NF11905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11905_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 12 - 400
Target Start/End: Complemental strand, 12081020 - 12080629
Alignment:
| Q |
12 |
acatcataaaaatacgactagataaaattaaatcaaaaccaaactta---gtaaataaaactataattcgtttaatgaagaatacgtcgcatcacatcta |
108 |
Q |
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|||| |||||||||||| | || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12081020 |
acataataaaaatacgattggacaaaattaaatcaaaaccaaacttattagtaaataaaactataattcgtttaatgaagaatacgtcgcatcacatcta |
12080921 |
T |
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| Q |
109 |
acacctcaacaaacgattaagaagaacttgagctggagtcaacaactcaaaaataggatgactccaattacaaccaaaattcaacgatgccatttttaga |
208 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12080920 |
acacctcaacaaacgattaagaagaatttgagctggagtcaacaacttaaaaataggatgactccaattacaaccaaaattcaacgatgccatttttaga |
12080821 |
T |
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| Q |
209 |
ataagttctacaaaatttcttttctaaaattatctgatatgatttgattagatgcatggataaacggtcgtataataaaaaatgaaataattttagatgc |
308 |
Q |
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||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
12080820 |
ataagttctacaagatttcttttctaaaattatctgatatcatttgattagatgcatggataaaccgtcgtataataaaaaatgaaataattttagatgc |
12080721 |
T |
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| Q |
309 |
aaagaaccgttataaatagttaaacaaagattctttgaagacagttcggtcaattgaattcaaacaaacacaacaatggctgccacattcat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12080720 |
aaagaaccgttataaatagttaaacaaagattctttgaagacagttcggtcaattgaattcaaacaaacacaacaatggctgccacattcat |
12080629 |
T |
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