View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11905_low_6 (Length: 369)

Name: NF11905_low_6
Description: NF11905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11905_low_6
NF11905_low_6
[»] chr2 (8 HSPs)
chr2 (5-352)||(7332036-7332384)
chr2 (216-301)||(7322895-7322980)
chr2 (210-288)||(7365457-7365535)
chr2 (213-289)||(7298108-7298184)
chr2 (226-278)||(7336340-7336392)
chr2 (76-107)||(7352854-7352885)
chr2 (214-252)||(7291307-7291345)
chr2 (110-142)||(7308422-7308454)


Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 5 - 352
Target Start/End: Original strand, 7332036 - 7332384
Alignment:
Q  5 aagaagagaaagttatttggttaaagaagtatacatgttcagtagttcacattcaattaaccaatccatattccattcatttacaaccatttgagtaaga 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7332036 aagaagagaaagttatttggttaaagaagtatacatgttcagtagttcacattcaattaaccaatccatattccattcatttacaaccatttgagtaaga 7332135  T
Q  105 aactctctctaaa-cacaagcaataacatcaaaatcacttttacttttcattgtggattcagattaaattgaaaaagaagcatccatgttagttaataat 203  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7332136 aactctctctaaaacacaagcaataacatcaaaatcacttttacttttcattgtggattcagattaaattgaaaaagaagcatccatgttagttaataat 7332235  T
Q  204 caaataaatcagaactaagaggatgaagatgttgttgacttgagataaaccttcagaaagcttttgagacacttcgttttatcctccagaatttgcattt 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7332236 caaataaatcagaactaagaggatgaagatgttgttgacttgagataaaccttcagaaagcttttgagacacttcgttttatcctccagaatttgcattt 7332335  T
Q  304 gagataaatcattaatagtttccaatttccctttcagaaactgaacatc 352  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  7332336 gagataaattattaatagtttccaatttccctttcagaaactgaacatc 7332384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 7322895 - 7322980
Alignment:
Q  216 aactaagaggatgaagatgttgttgacttgagataaaccttcagaaagcttttgagacacttcgttttatcctccagaatttgcat 301  Q
    |||||||| ||||||||||||| ||||||  |||||| |||||||||| ||||||||||||||  | |||||||||||||||||||    
T  7322895 aactaagaagatgaagatgttgctgacttacgataaatcttcagaaagattttgagacacttcaatctatcctccagaatttgcat 7322980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 288
Target Start/End: Original strand, 7365457 - 7365535
Alignment:
Q  210 aatcagaactaagaggatgaagatgttgttgacttgagataaaccttcagaaagcttttgagacacttcgttttatcct 288  Q
    ||||| |||| ||| ||||||||||||| ||| |||||||||| ||||||||| ||||  ||||||||| || ||||||    
T  7365457 aatcataactgagaagatgaagatgttgctgatttgagataaatcttcagaaaactttcaagacacttcattctatcct 7365535  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 289
Target Start/End: Original strand, 7298108 - 7298184
Alignment:
Q  213 cagaactaagaggatgaagatgttgttgacttgagataaaccttcagaaagcttttgagacacttcgttttatcctc 289  Q
    |||||||||||||||||||||||| || |||||||| ||| |   | ||||| |||||||||||||  |||||||||    
T  7298108 cagaactaagaggatgaagatgttttttacttgagagaaatccgtataaagcctttgagacacttcactttatcctc 7298184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 278
Target Start/End: Original strand, 7336340 - 7336392
Alignment:
Q  226 atgaagatgttgttgacttgagataaaccttcagaaagcttttgagacacttc 278  Q
    |||||||||||| |||||  |||||||||| || |||||||||||||||||||    
T  7336340 atgaagatgttggtgactcaagataaacctccaaaaagcttttgagacacttc 7336392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 107
Target Start/End: Original strand, 7352854 - 7352885
Alignment:
Q  76 tccattcatttacaaccatttgagtaagaaac 107  Q
    ||||||||||||||||||||||||||||||||    
T  7352854 tccattcatttacaaccatttgagtaagaaac 7352885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 7291307 - 7291345
Alignment:
Q  214 agaactaagaggatgaagatgttgttgacttgagataaa 252  Q
    ||||||||||||||||||||||| |||| ||||||||||    
T  7291307 agaactaagaggatgaagatgtttttgagttgagataaa 7291345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 7308422 - 7308454
Alignment:
Q  110 tctctaaacacaagcaataacatcaaaatcact 142  Q
    ||||||||||||| |||||||||||||||||||    
T  7308422 tctctaaacacaaacaataacatcaaaatcact 7308454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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