View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11905_low_7 (Length: 365)
Name: NF11905_low_7
Description: NF11905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11905_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 19 - 351
Target Start/End: Complemental strand, 34721022 - 34720690
Alignment:
| Q |
19 |
aatggtcatattagagttgctagaagggattcctattagagttgtgggctgcatactggatttagataaaggctcaagaaaacagttaagagcctatgta |
118 |
Q |
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| T |
34721022 |
aatggtcatattagagttgctagaagggattgctattagagttgtgggctgcatactggatttagataaaggctcaagaaaacagttaagagcctatgta |
34720923 |
T |
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| Q |
119 |
tnnnnnnnttagggtagcatactcttgattacatcatgatacaaataattatcgtgattgtttggacttgaacgcgagtacgatgttcctaaaactagat |
218 |
Q |
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| T |
34720922 |
taaaaaaattagggtagcatactcttgattacatcatgatacaaataattatcgtgattgtttggacttgaacgcgagtacgatattcctaaaactagat |
34720823 |
T |
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| Q |
219 |
tggtgtgggtatgaaattcattaaaacctcatgtaataaaaattcaacttcaagctattagtcaaaacttataccaaagagcagccaattttagttgatt |
318 |
Q |
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| T |
34720822 |
tggtgtgggtatgaaattcattaaaacctcatgtaataaaaattcaactccaagctattagtcaaaacttataccaaagagcagccaattttagttgatt |
34720723 |
T |
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| Q |
319 |
tatgtttattatagttacttacaaatcattcat |
351 |
Q |
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| T |
34720722 |
tatgtttattatagttacttacaaatcattcat |
34720690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 351
Target Start/End: Complemental strand, 34726052 - 34725930
Alignment:
| Q |
234 |
attcattaaaacctcatgtaataaaaattcaacttcaa---gctattagtcaaaacttataccaaagagcagccaattttagttgatttat--gtttatt |
328 |
Q |
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| T |
34726052 |
attcgttaaaacctgatttagtaaaaatacaacttcaaattgctgttagtcaaaacttagaccagagaacatccacttttggttgatttataggtttatt |
34725953 |
T |
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| Q |
329 |
atagttacttacaaatcattcat |
351 |
Q |
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| T |
34725952 |
atagttaattgcaagtcattcat |
34725930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 38610740 - 38610676
Alignment:
| Q |
146 |
attacatcatgatacaaataattatcgtgattgtttggacttgaacgcgagtacgatgttcctaa |
210 |
Q |
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| T |
38610740 |
attacagcatgatacaaataattatcatgattgtttggacttgagtgtgattatgatgttcctaa |
38610676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 38795525 - 38795461
Alignment:
| Q |
146 |
attacatcatgatacaaataattatcgtgattgtttggacttgaacgcgagtacgatgttcctaa |
210 |
Q |
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| T |
38795525 |
attacagcatgatacaaataattatcatgattgtttggacttgagtgtgattatgatgttcctaa |
38795461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 254 - 351
Target Start/End: Complemental strand, 23481337 - 23481240
Alignment:
| Q |
254 |
ataaaaattcaacttcaagctattagtcaaaacttataccaaagagcagccaattttagttgatttatgtttattatagttacttacaaatcattcat |
351 |
Q |
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||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||| |||||| |
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| T |
23481337 |
ataaaaattcaacttcaaggttttagtcaaaacttataccaaagagcagccaattttagttgatttatgtttattacagttacgtgcaaattattcat |
23481240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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