View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11905_low_8 (Length: 296)
Name: NF11905_low_8
Description: NF11905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11905_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 10 - 281
Target Start/End: Original strand, 38928003 - 38928275
Alignment:
| Q |
10 |
ttctcttgtataaccgtcttggaatatattgatattgaaaggtgtgagagaaaaagaatggttcagcatgtttacggtatggaatcttaacattggagga |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38928003 |
ttctcttgtataaccgtcttggaatatattgatattgaaaggtgtgagagaaaaagaatggttcagcatgtttacggtatggaatcttaacattggagga |
38928102 |
T |
|
| Q |
110 |
atcatgggatgatatatgtttcgatg-ttttcttaaaatgtagccgtaattccatgattggtttgtcgttgttgaaacaaatgggagagtcgaaacagac |
208 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
38928103 |
atcatgggatgatatatgtttcgatgtttttcttaaaatgtagccgtaattccataatttgtttgtcgttgttgaaacaaatgggagagtcgaaacaaac |
38928202 |
T |
|
| Q |
209 |
aatggtgcagtatatggaatattttaccatatataggtgttcttaagaagttctgtccaacgtggctaattat |
281 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38928203 |
aatggtgtagtatatggaatattttaccatatataggtgttcttaagaagttctgtccaacgtggctaattat |
38928275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University