View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11905_low_9 (Length: 271)
Name: NF11905_low_9
Description: NF11905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11905_low_9 |
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| [»] chr8 (5 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 15 - 271
Target Start/End: Original strand, 34720454 - 34720710
Alignment:
| Q |
15 |
atggacatcggaatcatcagatagcatagtgacaaaacttggtgtgccaatgttgacttttgcatacttcaagggaaaatcttttattcgggggaactcg |
114 |
Q |
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| T |
34720454 |
atggacatcggaatcatcagatagcatagtgacaaaacttggtgtgccaatgttgacttttgcatacttcaagggaaaatcttttattcgggggaactcg |
34720553 |
T |
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| Q |
115 |
ctgttttgtatgttttgcaaggctaaatttatagcagtctttgaataggcaaatggattcatctgttgcttcccatctgcagaactaaactatattagaa |
214 |
Q |
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| T |
34720554 |
ctgttttgtatgttttgcaaggctaaatttatagcagtctttgaataggcaaatggattcatctgttgcttcccatctgcagaactaaactatattagaa |
34720653 |
T |
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| Q |
215 |
gataagagagagcggtaaaatgtgcatgattgtgaaatgaatgatttgtaagtaact |
271 |
Q |
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| T |
34720654 |
gataagagagagcggtaaaatgtgcatgattgtgaaatgaatgatttgtaagtaact |
34720710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 15 - 271
Target Start/End: Original strand, 34725694 - 34725950
Alignment:
| Q |
15 |
atggacatcggaatcatcagatagcatagtgacaaaacttggtgtgccaatgttgacttttgcatacttcaagggaaaatcttttattcgggggaactcg |
114 |
Q |
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| T |
34725694 |
atggaaattggagtcatgagaaagcatagtgacagtacttggtgtgtcaatgttgtcttttgaaggcttcaagagaaaatcttttgcttgggggagcttg |
34725793 |
T |
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| Q |
115 |
ctgttttgtatgttttgcaaggctaaatttatagcagtctttgaataggcaaatggattcatctgttgcttcccatctgcagaactaaactatattagaa |
214 |
Q |
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| T |
34725794 |
ctgttgtgcatgttttgccaggctaaatttgtagcagtcttggaattagtaaatggactcatctgttgcttcccatctgcagaaccaaaatatattagaa |
34725893 |
T |
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| Q |
215 |
gataagagagagcggtaaaatgtgcatgattgtgaaatgaatgatttgtaagtaact |
271 |
Q |
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| T |
34725894 |
gatagaagacaacagtaaaatttgaatcattgtgaaatgaatgacttgcaattaact |
34725950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 271
Target Start/End: Original strand, 34729752 - 34730008
Alignment:
| Q |
15 |
atggacatcggaatcatcagatagcatagtgacaaaacttggtgtgccaatgttgacttttgcatacttcaagggaaaatcttttattcgggggaactcg |
114 |
Q |
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| T |
34729752 |
atggacaatggaatcatcagaaaacatagtgacagtaccttgtgtgttagcgttgtcttttgcaggcttcaagagaaaatcttttgcttgggggagcttg |
34729851 |
T |
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| Q |
115 |
ctgttttgtatgttttgcaaggctaaatttatagcagtctttgaataggcaaatggattcatctgttgcttcccatctgcagaactaaactatattagaa |
214 |
Q |
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| T |
34729852 |
ctgttctgcatgttttgccaggctaaatttgtagcagtctttgaattagcaaatggactcatctgttgctttccatctgcggaaccaaaatatattagaa |
34729951 |
T |
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| Q |
215 |
gataagagagagcggtaaaatgtgcatgattgtgaaatgaatgatttgtaagtaact |
271 |
Q |
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| T |
34729952 |
gttataagagagcagtaaaatttgaatcattgagaaatgaatgacttgcaattaact |
34730008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 124 - 271
Target Start/End: Original strand, 38610395 - 38610542
Alignment:
| Q |
124 |
atgttttgcaaggctaaatttatagcagtctttgaataggcaaatggattcatctgttgcttcccatctgcagaactaaactatattagaagataagaga |
223 |
Q |
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| T |
38610395 |
atgttttgccaggctaaatatgtagcagtctttgaattagcaaatggactcatctgttgctttccatctgcagaaccgaaatatattagaagacagaaga |
38610494 |
T |
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| Q |
224 |
gagcggtaaaatgtgcatgattgtgaaatgaatgatttgtaagtaact |
271 |
Q |
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| T |
38610495 |
gaatagtaaaatttgcatcatcgcgaaatgaatgacttgcaattaact |
38610542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 124 - 271
Target Start/End: Original strand, 38795180 - 38795327
Alignment:
| Q |
124 |
atgttttgcaaggctaaatttatagcagtctttgaataggcaaatggattcatctgttgcttcccatctgcagaactaaactatattagaagataagaga |
223 |
Q |
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| T |
38795180 |
atgttttgccaggctaaatatgtagcagtctttgaattagcaaatggactcatctgttgctttccatctgcagaaccgaaatatattagaagacagaaga |
38795279 |
T |
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| Q |
224 |
gagcggtaaaatgtgcatgattgtgaaatgaatgatttgtaagtaact |
271 |
Q |
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| T |
38795280 |
gaatagtaaaatttgcataatcgcgaaatgaatgacttgcaattaact |
38795327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 271
Target Start/End: Original strand, 23481164 - 23481260
Alignment:
| Q |
175 |
atctgttgcttcccatctgcagaactaaactatattagaagataagagagagcggtaaaatgtgcatgattgtgaaatgaatgatttgtaagtaact |
271 |
Q |
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| T |
23481164 |
atctgttgcttctcatctgcagaactaaaatatattagaagatagatgagaatgataaaatttgcatcgtcgtgaaatgaataatttgcacgtaact |
23481260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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