View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11906_high_2 (Length: 264)
Name: NF11906_high_2
Description: NF11906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11906_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 2578473 - 2578713
Alignment:
| Q |
10 |
gcataggtaacttaggcataatgttgcagttctgaatcacaacagctgaatttccaaaaatgaaatcaactgttccataaatgttgcattctctataaaa |
109 |
Q |
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| T |
2578473 |
gcataggtaacttaggcataatgttgcagttttgaatcacaacagctgaatttccaaaaatgaaatcaactgttccataaatgttgcattctctataaaa |
2578572 |
T |
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| Q |
110 |
ttggcgattggaatgagcataaagagtgtcttgatatgcatcaatgtgacacttataataaactgcttgatcagcacttgtcattagtgctactgcttgg |
209 |
Q |
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| T |
2578573 |
ttggcgattggaatgagcataaagagtgtcttgatatgcatcaatgtgacacttataataaaccgcttgatcagcacttgtcattagtgctactgcttgg |
2578672 |
T |
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| Q |
210 |
tgcttttgtggacctgctgtattgcgaaaacccatgtctct |
250 |
Q |
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| T |
2578673 |
tgcttttgtggacctgctgtattgcgaaaacccatgtctct |
2578713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 29 - 229
Target Start/End: Complemental strand, 16605797 - 16605597
Alignment:
| Q |
29 |
aatgttgcagttctgaatcacaacagctgaatttccaaaaatgaaatcaactgttccataaatgttgcattctctataaaattggcgattggaatgagca |
128 |
Q |
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| T |
16605797 |
aatgttgcagttttgtaatacgacggctgagtttccgaaaatgaaatcgactgttccgtatatgttgcattcgcggtagaattggcgatttgagtgtgcg |
16605698 |
T |
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| Q |
129 |
taaagagtgtcttgatatgcatcaatgtgacacttataataaactgcttgatcagcacttgtcattagtgctactgcttggtgcttttgtggacctgctg |
228 |
Q |
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| T |
16605697 |
tagagtgtgtcttgatatgcatccatggaacatttgtagaaaactgcttgatctgcacttgtcattagtgctactgcttggtgtttttgtggaccggctg |
16605598 |
T |
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| Q |
229 |
t |
229 |
Q |
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| T |
16605597 |
t |
16605597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 85
Target Start/End: Original strand, 8380745 - 8380783
Alignment:
| Q |
47 |
cacaacagctgaatttccaaaaatgaaatcaactgttcc |
85 |
Q |
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| T |
8380745 |
cacaacagctgaattaccaaagatgaaatcaactgttcc |
8380783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 8767085 - 8767036
Alignment:
| Q |
63 |
ccaaaaatgaaatcaactgttccataaatgttgcattctctataaaattg |
112 |
Q |
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| T |
8767085 |
ccaaagatgaaatcaactgtgccatagatgttacattctctgtaaaattg |
8767036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 44474450 - 44474514
Alignment:
| Q |
48 |
acaacagctgaatttccaaaaatgaaatcaactgttccataaatgttgcattctctataaaattg |
112 |
Q |
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| T |
44474450 |
acaacagcagcatttccaaatatgaagtcaactgttccatagatgtcacattcgcgataaaattg |
44474514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 44488636 - 44488688
Alignment:
| Q |
60 |
tttccaaaaatgaaatcaactgttccataaatgttgcattctctataaaattg |
112 |
Q |
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| T |
44488636 |
tttccaaatataaaatctattgttccataaatgtcgcattctttataaaattg |
44488688 |
T |
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