View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11906_low_3 (Length: 264)
Name: NF11906_low_3
Description: NF11906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11906_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 2578473 - 2578713
Alignment:
| Q |
10 |
gcataggtaacttaggcataatgttgcagttctgaatcacaacagctgaatttccaaaaatgaaatcaactgttccataaatgttgcattctctataaaa |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2578473 |
gcataggtaacttaggcataatgttgcagttttgaatcacaacagctgaatttccaaaaatgaaatcaactgttccataaatgttgcattctctataaaa |
2578572 |
T |
|
| Q |
110 |
ttggcgattggaatgagcataaagagtgtcttgatatgcatcaatgtgacacttataataaactgcttgatcagcacttgtcattagtgctactgcttgg |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2578573 |
ttggcgattggaatgagcataaagagtgtcttgatatgcatcaatgtgacacttataataaaccgcttgatcagcacttgtcattagtgctactgcttgg |
2578672 |
T |
|
| Q |
210 |
tgcttttgtggacctgctgtattgcgaaaacccatgtctct |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2578673 |
tgcttttgtggacctgctgtattgcgaaaacccatgtctct |
2578713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 29 - 229
Target Start/End: Complemental strand, 16605797 - 16605597
Alignment:
| Q |
29 |
aatgttgcagttctgaatcacaacagctgaatttccaaaaatgaaatcaactgttccataaatgttgcattctctataaaattggcgattggaatgagca |
128 |
Q |
| |
|
|||||||||||| || | || || ||||| ||||| ||||||||||| |||||||| || ||||||||||| | || ||||||||||| || || || |
|
|
| T |
16605797 |
aatgttgcagttttgtaatacgacggctgagtttccgaaaatgaaatcgactgttccgtatatgttgcattcgcggtagaattggcgatttgagtgtgcg |
16605698 |
T |
|
| Q |
129 |
taaagagtgtcttgatatgcatcaatgtgacacttataataaactgcttgatcagcacttgtcattagtgctactgcttggtgcttttgtggacctgctg |
228 |
Q |
| |
|
|| || ||||||||||||||||| ||| ||| || || ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
16605697 |
tagagtgtgtcttgatatgcatccatggaacatttgtagaaaactgcttgatctgcacttgtcattagtgctactgcttggtgtttttgtggaccggctg |
16605598 |
T |
|
| Q |
229 |
t |
229 |
Q |
| |
|
| |
|
|
| T |
16605597 |
t |
16605597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 85
Target Start/End: Original strand, 8380745 - 8380783
Alignment:
| Q |
47 |
cacaacagctgaatttccaaaaatgaaatcaactgttcc |
85 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
8380745 |
cacaacagctgaattaccaaagatgaaatcaactgttcc |
8380783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 8767085 - 8767036
Alignment:
| Q |
63 |
ccaaaaatgaaatcaactgttccataaatgttgcattctctataaaattg |
112 |
Q |
| |
|
||||| |||||||||||||| ||||| ||||| |||||||| |||||||| |
|
|
| T |
8767085 |
ccaaagatgaaatcaactgtgccatagatgttacattctctgtaaaattg |
8767036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 44474450 - 44474514
Alignment:
| Q |
48 |
acaacagctgaatttccaaaaatgaaatcaactgttccataaatgttgcattctctataaaattg |
112 |
Q |
| |
|
|||||||| | ||||||||| ||||| |||||||||||||| |||| ||||| | ||||||||| |
|
|
| T |
44474450 |
acaacagcagcatttccaaatatgaagtcaactgttccatagatgtcacattcgcgataaaattg |
44474514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 44488636 - 44488688
Alignment:
| Q |
60 |
tttccaaaaatgaaatcaactgttccataaatgttgcattctctataaaattg |
112 |
Q |
| |
|
|||||||| || ||||| | |||||||||||||| ||||||| |||||||||| |
|
|
| T |
44488636 |
tttccaaatataaaatctattgttccataaatgtcgcattctttataaaattg |
44488688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University