View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11907_high_10 (Length: 449)

Name: NF11907_high_10
Description: NF11907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11907_high_10
NF11907_high_10
[»] chr1 (1 HSPs)
chr1 (1-274)||(17439398-17439671)
[»] chr2 (6 HSPs)
chr2 (5-241)||(30019295-30019531)
chr2 (5-241)||(30041164-30041400)
chr2 (5-241)||(30235302-30235538)
chr2 (5-200)||(30121928-30122125)
chr2 (5-200)||(30110642-30110839)
chr2 (5-200)||(30077864-30078058)
[»] chr6 (4 HSPs)
chr6 (297-442)||(34616032-34616177)
chr6 (297-442)||(34743469-34743614)
chr6 (363-442)||(11544864-11544943)
chr6 (367-442)||(34758580-34758655)
[»] chr7 (1 HSPs)
chr7 (5-262)||(15055547-15055804)


Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 17439398 - 17439671
Alignment:
Q  1 aactgactcggaatctactgttaaatgcttgcaagggaagctgaaaattgctgatttggatttgattatttctgattgtattcattttctgtctttaatt 100  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  17439398 aactgactcggaatctactgttaagtgtttgcaagggaagctgaaaattgctgatttggatttgattatctctgattgtattcatcttctgtctttaatt 17439497  T
Q  101 ccgaatgttagtgttgcttttgttagtagaaccaaaaacaaggctgcccatggcttggttaaagttgctattagtttaggttctaaatcttgggtgggtt 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  17439498 cctaatgttagtgttgcttttgttagtagaaccaaaaacaaggctgcccatggcttggttaaagttgctgttagtttaggttctaaatcttgggtgggtt 17439597  T
Q  201 gtgcccctgatcaaattgtagcaactgtttgtatggactctctttattctagttgaatgaaatatcttccagtc 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17439598 gtgcccctgatcaaattgtagcaactgtttgtatggactctctttattctagttgaatgaaatatcttccagtc 17439671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 149; Significance: 2e-78; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 5 - 241
Target Start/End: Complemental strand, 30019531 - 30019295
Alignment:
Q  5 gactcggaatctactgttaaatgcttgcaagggaagctgaaaattgctgatttggatttgattatttctgattgtattcattttctgtctttaattccga 104  Q
    ||||||||||||| ||||||||||||||||| |||||||||| |||| |||||  | |||||||| |||||||||||||||||||| || ||| |||| |    
T  30019531 gactcggaatctaatgttaaatgcttgcaagcgaagctgaaatttgcagatttatacttgattatatctgattgtattcattttctttccttacttccta 30019432  T
Q  105 atgttagtgttgcttttgttagtagaaccaaaaacaaggctgcccatggcttggttaaagttgctattagtttaggttctaaatcttgggtgggttgtgc 204  Q
    |||||||||||||||||||| |||||||||| ||||| |||||||||||||| |||||||||| | ||||||| ||||||||||| ||||||| ||||||    
T  30019431 atgttagtgttgcttttgttggtagaaccaagaacaaagctgcccatggcttagttaaagttgttgttagtttgggttctaaatcatgggtggattgtgc 30019332  T
Q  205 ccctgatcaaattgtagcaactgtttgtatggactct 241  Q
    |||||||||||||| ||||||||||||||||||||||    
T  30019331 ccctgatcaaattgcagcaactgtttgtatggactct 30019295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 5 - 241
Target Start/End: Original strand, 30041164 - 30041400
Alignment:
Q  5 gactcggaatctactgttaaatgcttgcaagggaagctgaaaattgctgatttggatttgattatttctgattgtattcattttctgtctttaattccga 104  Q
    ||||||||||||| ||||||||||||||||| |||||||||| |||| |||||  | |||||||| |||||||||||||||||||| || ||| |||| |    
T  30041164 gactcggaatctaatgttaaatgcttgcaagcgaagctgaaatttgcagatttatacttgattatatctgattgtattcattttctttccttacttccta 30041263  T
Q  105 atgttagtgttgcttttgttagtagaaccaaaaacaaggctgcccatggcttggttaaagttgctattagtttaggttctaaatcttgggtgggttgtgc 204  Q
    |||||||||||||||||||| |||||||||| ||||| |||||||||||||| |||||||||| | ||||||| ||||||||||| ||||||| ||||||    
T  30041264 atgttagtgttgcttttgttggtagaaccaagaacaaagctgcccatggcttagttaaagttgttgttagtttgggttctaaatcatgggtggattgtgc 30041363  T
Q  205 ccctgatcaaattgtagcaactgtttgtatggactct 241  Q
    |||||||||||||| ||||||||||||||||||||||    
T  30041364 ccctgatcaaattgcagcaactgtttgtatggactct 30041400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 5 - 241
Target Start/End: Original strand, 30235302 - 30235538
Alignment:
Q  5 gactcggaatctactgttaaatgcttgcaagggaagctgaaaattgctgatttggatttgattatttctgattgtattcattttctgtctttaattccga 104  Q
    ||||||||||||| ||||||||||||||||| |||||||||| |||| |||||  | |||||||| |||||||||||||||||||| || ||| |||| |    
T  30235302 gactcggaatctaatgttaaatgcttgcaagcgaagctgaaatttgcagatttatacttgattatatctgattgtattcattttctttccttacttccta 30235401  T
Q  105 atgttagtgttgcttttgttagtagaaccaaaaacaaggctgcccatggcttggttaaagttgctattagtttaggttctaaatcttgggtgggttgtgc 204  Q
    |||||||||||||||||||| |||||||||| ||||| |||||||||||||| |||||||||| | ||||||| ||||||||||| ||||||| ||||||    
T  30235402 atgttagtgttgcttttgttggtagaaccaagaacaaagctgcccatggcttagttaaagttgttgttagtttgggttctaaatcatgggtggattgtgc 30235501  T
Q  205 ccctgatcaaattgtagcaactgtttgtatggactct 241  Q
    |||||||||||||| ||||||||||||||||||||||    
T  30235502 ccctgatcaaattgcagcaactgtttgtatggactct 30235538  T

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Target: chr2; HSP #4
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 5 - 200
Target Start/End: Original strand, 30121928 - 30122125
Alignment:
Q  5 gactcggaatctactgttaaatgcttgcaagggaagctgaaaattgctgatttggatttgattatttctgattgtattcattttctgtctttaattccga 104  Q
    ||||||||||||| ||||||||||||||||| |||| ||||| |||| |||||||| |||||||| |||||||||||||||||||| || ||| |||| |    
T  30121928 gactcggaatctaatgttaaatgcttgcaagcgaagatgaaagttgcagatttggacttgattatatctgattgtattcattttctttccttacttccta 30122027  T
Q  105 atgttagtgttgcttttgttagtagaa--ccaaaaacaaggctgcccatggcttggttaaagttgctattagtttaggttctaaatcttgggtgggtt 200  Q
    |||||||||||||||||||| ||||||  |||| ||||| |||||||||||||| |||||||||| | ||||||| ||||||||||| ||||||||||    
T  30122028 atgttagtgttgcttttgttggtagaacgccaagaacaaagctgcccatggcttagttaaagttgttgttagtttgggttctaaatcatgggtgggtt 30122125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 5 - 200
Target Start/End: Original strand, 30110642 - 30110839
Alignment:
Q  5 gactcggaatctactgttaaatgcttgcaagggaagctgaaaattgctgatttggatttgattatttctgattgtattcattttctgtctttaattccga 104  Q
    ||||||||||||| ||||||||||||||||| |||||||||| |||| |||||  | |||||||| |||||||||||||||||||| || ||| |||| |    
T  30110642 gactcggaatctaatgttaaatgcttgcaagcgaagctgaaatttgcagatttatacttgattatatctgattgtattcattttctttccttacttccta 30110741  T
Q  105 atgttagtgttgcttttgttagtagaa--ccaaaaacaaggctgcccatggcttggttaaagttgctattagtttaggttctaaatcttgggtgggtt 200  Q
    |||||||||||||||||||| ||||||  |||| ||||| |||||||||||||| |||||||||| | ||||||| ||||||||||| ||||||||||    
T  30110742 atgttagtgttgcttttgttggtagaacgccaagaacaaagctgcccatggcttagttaaagttgttgttagtttgggttctaaatcatgggtgggtt 30110839  T

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Target: chr2; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 5 - 200
Target Start/End: Complemental strand, 30078058 - 30077864
Alignment:
Q  5 gactcggaatctactgttaaatgcttgcaagggaagctgaaaattgctgatttggatttgattatttctgattgtattcattttctgtctttaattccga 104  Q
    ||||||||||||| ||||||||||||||||| |||| ||||| ||||    ||||| |||||||| |||||||||||||||||||| |   || |||| |    
T  30078058 gactcggaatctaatgttaaatgcttgcaagcgaagatgaaagttgca---ttggacttgattatatctgattgtattcattttctttacatacttccta 30077962  T
Q  105 atgttagtgttgcttttgttagtagaaccaaaaacaagg--ctgcccatggcttggttaaagttgctattagtttaggttctaaatcttgggtgggtt 200  Q
    |||||||||||||||||||| |||||||||| ||||| |  ||||||||||||| |||||| ||| | ||||||| ||||||||||| ||||||||||    
T  30077961 atgttagtgttgcttttgttggtagaaccaagaacaaagagctgcccatggcttagttaaatttgttgttagtttgggttctaaatcatgggtgggtt 30077864  T

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Target: chr6 (Bit Score: 146; Significance: 9e-77; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 297 - 442
Target Start/End: Complemental strand, 34616177 - 34616032
Alignment:
Q  297 aaggagttttactcatcaaaattaatcttagtttgtatttcacgaatggatagaagatagtaacagtagcatttccatggagcttaaacttcaagcatca 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34616177 aaggagttttactcatcaaaattaatcttagtttgtatttcacgaatggatagaagatagtaacagtagcatttccatggagcttaaacttcaagcatca 34616078  T
Q  397 atggcttcatcttcatcttcttccactcctttctgcacctatgcta 442  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  34616077 atggcttcatcttcatcttcttccactcctttctgcacctatgcta 34616032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 297 - 442
Target Start/End: Complemental strand, 34743614 - 34743469
Alignment:
Q  297 aaggagttttactcatcaaaattaatcttagtttgtatttcacgaatggatagaagatagtaacagtagcatttccatggagcttaaacttcaagcatca 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34743614 aaggagttttactcatcaaaattaatcttagtttgtatttcacgaatggatagaagatagtaacagtagcatttccatggagcttaaacttcaagcatca 34743515  T
Q  397 atggcttcatcttcatcttcttccactcctttctgcacctatgcta 442  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  34743514 atggcttcatcttcatcttcttccactcctttctgcacctatgcta 34743469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 363 - 442
Target Start/End: Complemental strand, 11544943 - 11544864
Alignment:
Q  363 tagcatttccatggagcttaaacttcaagcatcaatggcttcatcttcatcttcttccactcctttctgcacctatgcta 442  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11544943 tagcatttccatgtagcttaaacttcaagcatcaatggcttcatcttcatcttcttccactcctttctgcacctatgcta 11544864  T

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Target: chr6; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 367 - 442
Target Start/End: Complemental strand, 34758655 - 34758580
Alignment:
Q  367 atttccatggagcttaaacttcaagcatcaatggcttcatcttcatcttcttccactcctttctgcacctatgcta 442  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34758655 atttccatggagcttaaacttcaagcatcaatggcttcatcttcatcttcttccactcctttctgcacctatgcta 34758580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 5 - 262
Target Start/End: Complemental strand, 15055804 - 15055547
Alignment:
Q  5 gactcggaatctactgttaaatgcttgcaagggaagctgaaaattgctgatttggatttgattatttctgattgtattcattttctgtctttaattccga 104  Q
    ||||| ||||||||||| |||||  |||| || ||||||||  | || || || ||| |  |||| ||||||||||| |||||||| | |||| | || |    
T  15055804 gactctgaatctactgtcaaatgtctgcagggaaagctgaatgtagcagaattagatctagttatctctgattgtatccattttctttttttactaccaa 15055705  T
Q  105 atgttagtgttgcttttgttagtagaaccaaaaacaaggctgcccatggcttggttaaagttgctattagtttaggttctaaatcttgggtgggttgtgc 204  Q
    |||| | |||||||||| ||||||||||||| ||||| ||||| |||||||||||| |||||||| ||| |||| | |||| |||||||||||||||| |    
T  15055704 atgtaattgttgcttttattagtagaaccaagaacaaagctgctcatggcttggttgaagttgctgttaatttaagctctagatcttgggtgggttgtac 15055605  T
Q  205 ccctgatcaaattgtagcaactgtttgtatggactctctttattctagttgaatgaaa 262  Q
     ||||||||||||| ||| | |||||||| | | ||||||| ||||| ||||||||||    
T  15055604 tcctgatcaaattgcagccattgtttgtaagaattctctttcttctaattgaatgaaa 15055547  T

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