View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11907_high_12 (Length: 379)

Name: NF11907_high_12
Description: NF11907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11907_high_12
NF11907_high_12
[»] chr8 (3 HSPs)
chr8 (19-364)||(42693458-42693803)
chr8 (97-190)||(24042463-24042556)
chr8 (129-181)||(42699647-42699699)
[»] chr2 (3 HSPs)
chr2 (110-178)||(20578958-20579026)
chr2 (105-139)||(20585987-20586021)
chr2 (97-190)||(24001575-24001668)
[»] scaffold0464 (1 HSPs)
scaffold0464 (116-157)||(7220-7261)
[»] chr4 (2 HSPs)
chr4 (99-193)||(45096130-45096224)
chr4 (91-135)||(45078377-45078421)
[»] chr5 (2 HSPs)
chr5 (122-217)||(8838505-8838597)
chr5 (99-217)||(9363536-9363651)
[»] chr3 (2 HSPs)
chr3 (116-157)||(12735669-12735710)
chr3 (113-157)||(32579708-32579752)
[»] chr7 (4 HSPs)
chr7 (111-147)||(19721244-19721280)
chr7 (91-190)||(41682138-41682237)
chr7 (111-157)||(19598576-19598622)
chr7 (120-157)||(19888564-19888601)
[»] chr1 (6 HSPs)
chr1 (104-160)||(42414161-42414217)
chr1 (99-147)||(43907694-43907742)
chr1 (99-181)||(43986891-43986973)
chr1 (93-142)||(19568041-19568090)
chr1 (91-140)||(23681672-23681721)
chr1 (93-142)||(44005459-44005508)
[»] chr6 (1 HSPs)
chr6 (120-157)||(14748577-14748614)


Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 19 - 364
Target Start/End: Complemental strand, 42693803 - 42693458
Alignment:
Q  19 aagctatgatttcgcattttccagaatgaataacggaagtgaccaatagtggatccgcggttgaggcttttcgatgggtctttgagaattgaggatcaga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42693803 aagctatgatttcgcattttccagaatgaataacggaagtgaccaatagtggatccgcggttgaggcttttcgatgggtctttgagaattgaggatcaga 42693704  T
Q  119 gattagggttttccatgatttgcagacacgtttgaattgaaggagagatcgcactggaagtctaaggaggatttcgttgatgatgagttcttctggcaat 218  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42693703 gattagagttttccatgatttgcagacacatttgaattgaaggagagatcgcactggaagtctaaggaggatttcgttgatgatgagttcttctggcaat 42693604  T
Q  219 tccggcaatggattctcggtgtcggttttaggaacagatggagtcgaaacggtgtcgttttgagagttatggagaggcgtttttgaagggctggtgggtt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42693603 tccggcaatggattctcggtgtcggttttaggaacagatggagtcgaaacggtgtcgttttgagagttatggagaggcgtttttgaaggactggtgggtt 42693504  T
Q  319 ggggtttcaggatcttaaagtcgttacacatcttgtcactgccgcc 364  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  42693503 ggggtttcaggatcttaaagtcgttacccatcttgtcactgccgcc 42693458  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 190
Target Start/End: Original strand, 24042463 - 24042556
Alignment:
Q  97 tctttgagaattgaggatcagagattagggttttccatgatttgcagacacgtttgaattgaaggagagatcgcactggaagtctaaggaggat 190  Q
    |||||| ||| |||||||||||||||||  ||||||| ||||| ||||| | ||| ||||||||||| |||| ||| |||||||| || |||||    
T  24042463 tctttgcgaactgaggatcagagattagaattttccaagatttacagacgcatttaaattgaaggagggatctcaccggaagtctgagtaggat 24042556  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 42699699 - 42699647
Alignment:
Q  129 ttccatgatttgcagacacgtttgaattgaaggagagatcgcactggaagtct 181  Q
    |||||||||||||| |||| ||| ||||||||||| |||| ||| ||||||||    
T  42699699 ttccatgatttgcaaacacatttaaattgaaggagggatctcacaggaagtct 42699647  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 110 - 178
Target Start/End: Original strand, 20578958 - 20579026
Alignment:
Q  110 aggatcagagattagggttttccatgatttgcagacacgtttgaattgaaggagagatcgcactggaag 178  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||  || || |||| |||||||||    
T  20578958 aggatcagagattagggttttccatgatttgcaaacacgtttcaatttcagtagggatctcactggaag 20579026  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 139
Target Start/End: Original strand, 20585987 - 20586021
Alignment:
Q  105 aattgaggatcagagattagggttttccatgattt 139  Q
    ||||||||||| |||||||||||||||||||||||    
T  20585987 aattgaggatcggagattagggttttccatgattt 20586021  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 190
Target Start/End: Complemental strand, 24001668 - 24001575
Alignment:
Q  97 tctttgagaattgaggatcagagattagggttttccatgatttgcagacacgtttgaattgaaggagagatcgcactggaagtctaaggaggat 190  Q
    |||||| ||| |||||||| | ||||||| ||||||| ||||| || || | ||| ||||||||||| |||| ||| |||||||| || |||||    
T  24001668 tctttgcgaactgaggatccgtgattaggattttccaagatttacacacgcatttaaattgaaggagggatctcacaggaagtctgagtaggat 24001575  T

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Target: scaffold0464 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 7261 - 7220
Alignment:
Q  116 agagattagggttttccatgatttgcagacacgtttgaattg 157  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  7261 agagattagggttttccatgatttgcagacacatttgaattg 7220  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 193
Target Start/End: Original strand, 45096130 - 45096224
Alignment:
Q  99 tttgagaattgaggatcagagattagggttttccatgatttgcagacacgtttgaattgaaggagagatcgcactggaagtctaaggaggatttc 193  Q
    |||| |||||||||||| |||| |||||||||||| | |||||| ||||  ||| ||||||||||||||  ||| | |||||  |||||||||||    
T  45096130 tttgcgaattgaggatctgagagtagggttttccaggttttgcacacacacttgtattgaaggagagatttcaccgaaagtcggaggaggatttc 45096224  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 135
Target Start/End: Original strand, 45078377 - 45078421
Alignment:
Q  91 gatgggtctttgagaattgaggatcagagattagggttttccatg 135  Q
    ||||| ||||||  |||||||||| ||||||||||||||||||||    
T  45078377 gatggttctttgcaaattgaggattagagattagggttttccatg 45078421  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 217
Target Start/End: Original strand, 8838505 - 8838597
Alignment:
Q  122 tagggttttccatgatttgcagacacgtttgaattgaaggagagatcgcactggaagtctaaggaggatttcgttgatgatgagttcttctggcaa 217  Q
    ||||||||||||||||||||| ||||  |||||| ||||||| ||||  || ||||| || |||||||||    ||| ||||||||||||||||||    
T  8838505 tagggttttccatgatttgcaaacacacttgaatcgaaggagtgatcttaccggaagcctgaggaggatt---atgacgatgagttcttctggcaa 8838597  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 217
Target Start/End: Complemental strand, 9363651 - 9363536
Alignment:
Q  99 tttgagaattgaggatcagagattagggttttccatgatttgcagacacgtttgaattgaaggagagatcgcactggaagtctaaggaggatttcgttga 198  Q
    |||| |||||| | ||| ||||||||||||||||||| |||||| ||||| || ||  ||||||| ||||  || ||||| || |||||||||   || |    
T  9363651 tttgcgaattgggtatctgagattagggttttccatgttttgcaaacacgcttaaaccgaaggagtgatcttaccggaagactgaggaggatt---ttaa 9363555  T
Q  199 tgatgagttcttctggcaa 217  Q
     ||||||||||||||||||    
T  9363554 cgatgagttcttctggcaa 9363536  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 157
Target Start/End: Original strand, 12735669 - 12735710
Alignment:
Q  116 agagattagggttttccatgatttgcagacacgtttgaattg 157  Q
    ||||||||||||||||||||||||||| |||| |||||||||    
T  12735669 agagattagggttttccatgatttgcaaacacatttgaattg 12735710  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 32579708 - 32579752
Alignment:
Q  113 atcagagattagggttttccatgatttgcagacacgtttgaattg 157  Q
    |||||| ||||||||||||||||||||||| |||| |||||||||    
T  32579708 atcagaaattagggttttccatgatttgcaaacacatttgaattg 32579752  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 147
Target Start/End: Complemental strand, 19721280 - 19721244
Alignment:
Q  111 ggatcagagattagggttttccatgatttgcagacac 147  Q
    ||||||||||||||||||||| |||||||||||||||    
T  19721280 ggatcagagattagggttttcaatgatttgcagacac 19721244  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 190
Target Start/End: Original strand, 41682138 - 41682237
Alignment:
Q  91 gatgggtctttgagaattgaggatca-gagattagggttttccatgatttgcagacacgtttgaattgaaggagagatcgcactggaagtctaaggagga 189  Q
    |||||||||||| ||||||||| ||| |||||||||||||||||||||||| | || |   | ||||||||||| ||   |||||||||||| |||||||    
T  41682138 gatgggtctttgcgaattgagg-tcatgagattagggttttccatgatttggacacgcacataaattgaaggagggaagtcactggaagtctgaggagga 41682236  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 157
Target Start/End: Original strand, 19598576 - 19598622
Alignment:
Q  111 ggatcagagattagggttttccatgatttgcagacacgtttgaattg 157  Q
    |||| ||||||||||||||||||||| |||||||| | |||||||||    
T  19598576 ggatgagagattagggttttccatgacttgcagacgcatttgaattg 19598622  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 157
Target Start/End: Original strand, 19888564 - 19888601
Alignment:
Q  120 attagggttttccatgatttgcagacacgtttgaattg 157  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  19888564 attagggttttccatgatttgcaaacacatttgaattg 19888601  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 42414217 - 42414161
Alignment:
Q  104 gaattgaggatcagagattagggttttccatgatttgcagacacgtttgaattgaag 160  Q
    |||||| ||||| |||||||||||||||||||||||||| ||||   ||||||||||    
T  42414217 gaattggggatcggagattagggttttccatgatttgcatacacacctgaattgaag 42414161  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 43907742 - 43907694
Alignment:
Q  99 tttgagaattgaggatcagagattagggttttccatgatttgcagacac 147  Q
    |||| |||||| | |||||||||||||||||||||||||||||| ||||    
T  43907742 tttgcgaattgggaatcagagattagggttttccatgatttgcaaacac 43907694  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 181
Target Start/End: Original strand, 43986891 - 43986973
Alignment:
Q  99 tttgagaattgaggatcagagattagggttttccatgatttgcagacacgtttgaattgaaggagagatcgcactggaagtct 181  Q
    |||| |||||| || || |||||||||||||||||||||||||| |  | |||||||||||| || |||  ||| ||||||||    
T  43986891 tttgcgaattgtgggtctgagattagggttttccatgatttgcaaatgcatttgaattgaagcagggatttcaccggaagtct 43986973  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 19568041 - 19568090
Alignment:
Q  93 tgggtctttgagaattgaggatcagagattagggttttccatgatttgca 142  Q
    |||||||||| |||||| | || ||| |||||||||||||||||||||||    
T  19568041 tgggtctttgtgaattgtgaattagaaattagggttttccatgatttgca 19568090  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 23681721 - 23681672
Alignment:
Q  91 gatgggtctttgagaattgaggatcagagattagggttttccatgatttg 140  Q
    ||||| |||||| |||||||||||  || |||||||||||||||||||||    
T  23681721 gatggctctttgcgaattgaggattggaaattagggttttccatgatttg 23681672  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 44005459 - 44005508
Alignment:
Q  93 tgggtctttgagaattgaggatcagagattagggttttccatgatttgca 142  Q
    ||||| |||| |||||| |||| |||||||||||||||||| ||||||||    
T  44005459 tgggtttttgtgaattggggattagagattagggttttccaagatttgca 44005508  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 157
Target Start/End: Complemental strand, 14748614 - 14748577
Alignment:
Q  120 attagggttttccatgatttgcagacacgtttgaattg 157  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  14748614 attagggttttccatgatttgcaaacacatttgaattg 14748577  T

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