View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11907_high_13 (Length: 372)
Name: NF11907_high_13
Description: NF11907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11907_high_13 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: scaffold0252 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 20595 - 20935
Alignment:
| Q |
1 |
tttggattgttcatagggctatgaaggaaaaagggttctatttagatgaagagacacatgtgacgatttcaacaagtttaaaaggggagaagttgaagag |
100 |
Q |
| |
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|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
20595 |
tttggattgttcttagggctatgaaagaaaaagggttctatttagatgaagagacacatgtgacgatttcaaggagtttaaaaggggagaagttgaagag |
20694 |
T |
|
| Q |
101 |
tgatgttgttgcgctttcacatttctacaaagggatgcttgagcagaatgcaatgcagaatgcaatgcagaatgttgtcaaaaaggtggttggcattatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
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| T |
20695 |
tgatgttgttgcgctttcacatttctacaaagggatgcttgagcag------------aatgcaatgcagaatgttgtcaaaaaggtggttggcattact |
20782 |
T |
|
| Q |
201 |
tcagggtctgattgggatgataaggttgagaatgaactggagaaggttaaaattcagctttcggataatttcgtgattagggtcatgaaagagcttcgag |
300 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20783 |
taagggtctgattgggatgataaggttgagaatgaactggagaaggttaaaatt---ctttcggataatttcgtgattagggtcatgaaagagcttcgag |
20879 |
T |
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| Q |
301 |
atggtcctttaaaggcttataagttttttcattgggttgggaagcaatctagttat |
356 |
Q |
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|| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
20880 |
atagtcctttaaaggcttataagttttttcattgggttggaaagaaatctagttat |
20935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 43435112 - 43435455
Alignment:
| Q |
1 |
tttggattgttcatagggctatgaaggaaaaagggttctatttagatgaagagacacatgtgacgatttcaacaagtttaaaaggggagaagttgaagag |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||| ||||||||||||||||| || |||||||||| || |||| ||| ||||||| |||||||| |
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| T |
43435112 |
tttggattgttcttagggctatgaaggaaaaagggttttatttagatgaagagacgtatttgacgatttctacgggtttgaaaagggagaatttgaagag |
43435211 |
T |
|
| Q |
101 |
tgatgttgttgcgctttcacatttctacaaagggatgcttgagcagaatgcaatgcagaatgcaatgcagaatgttgtcaaaaaggtggttggcattatt |
200 |
Q |
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|||| ||||||| |||||||||||||| ||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
43435212 |
tgatattgttgcactttcacatttctataaagggatgcttgagcaaaatg------------caatgcagaatgttgttaaaaaggtggttggcattatt |
43435299 |
T |
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| Q |
201 |
tcagggtctgattgggatgataaggttgagaatgaactggagaaggttaaaattcagctttcggataatttcgtgattagggtcatgaaagagcttcgag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43435300 |
tcagggtctgattgggatgataaggttgagaatgaactggagaaggttaaaattcagctttcggataatttcgtgattagggttatgaaagagcttcgag |
43435399 |
T |
|
| Q |
301 |
atggtcctttaaaggcttataagttttttcattgggttgggaagcaatctagttat |
356 |
Q |
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|| |||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43435400 |
atagtcccttaaaggcttataagttttttcattgggttgggaagcaatctggttat |
43435455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 43426607 - 43426950
Alignment:
| Q |
1 |
tttggattgttcatagggctatgaaggaaaaagggttctatttagatgaagagacacatgtgacgatttcaacaagtttaaaaggggagaagttgaagag |
100 |
Q |
| |
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|||||||||||| || ||||||||||||||| ||||| ||||||||||||||||||||| ||| |||| || ||| ||| || |||| ||||||| |
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| T |
43426607 |
tttggattgttcttaaggctatgaaggaaaatgggttttatttagatgaagagacacatttgatactttcggcagatttgaaaaaggcgaagatgaagag |
43426706 |
T |
|
| Q |
101 |
tgatgttgttgcgctttcacatttctacaaagggatgcttgagcagaatgcaatgcagaatgcaatgcagaatgttgtcaaaaaggtggttggcattatt |
200 |
Q |
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||||||||||| | ||||| |||||| |||||||||||||||||| |||| |||||||| ||||||||||||||||||||| |||||| |
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| T |
43426707 |
tgatgttgttgagtattcacgtttctataaagggatgcttgagcaggatgc------------aatgcagagtgttgtcaaaaaggtggttggtattatt |
43426794 |
T |
|
| Q |
201 |
tcagggtctgattgggatgataaggttgagaatgaactggagaaggttaaaattcagctttcggataatttcgtgattagggtcatgaaagagcttcgag |
300 |
Q |
| |
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||||||||||||||||| || || ||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
43426795 |
tcagggtctgattgggacaatgagattgagaatgaactcgagaaggttaaaattcaactttcggacaatttcgtgattagggttatgaaagagcttcgaa |
43426894 |
T |
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| Q |
301 |
atggtcctttaaaggcttataagttttttcattgggttgggaagcaatctagttat |
356 |
Q |
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|| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
43426895 |
atagtcctttaaaggcttataagttttttcattgggttggaaagcaatctggttat |
43426950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 265 - 356
Target Start/End: Original strand, 43443558 - 43443649
Alignment:
| Q |
265 |
ataatttcgtgattagggtcatgaaagagcttcgagatggtcctttaaaggcttataagttttttcattgggttgggaagcaatctagttat |
356 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43443558 |
ataatttcgtgattagggttatgaaagagcttcgagatagtcccttaaaggcttataagttttttcattgggttgggaagcaatctggttat |
43443649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 159 - 356
Target Start/End: Original strand, 43422175 - 43422372
Alignment:
| Q |
159 |
aatgcaatgcagaatgttgtcaaaaaggtggttggcattatttcagggtctgattgggatgataaggttgagaatgaactggagaaggttaaaattcagc |
258 |
Q |
| |
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||||||| |||| |||| |||| ||||||||| | | |||| ||| ||||| |||| |||| |||||| |||||| || | || |||| ||||| |
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| T |
43422175 |
aatgcaaggcaggttgttttcaacaaggtggttagtgtgattttaggatctgagtggggtgatgaggttgtgaatgagcttgtagagcttaagattcaat |
43422274 |
T |
|
| Q |
259 |
tttcggataatttcgtgattagggtcatgaaagagcttcgagatggtcctttaaaggcttataagttttttcattgggttgggaagcaatctagttat |
356 |
Q |
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||||||||| ||| ||||| |||| |||||||||||||| | |||||||||||| ||| || |||||| |||||||||||||||||||| ||||| |
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| T |
43422275 |
tttcggatagttttgtgatacgggttttgaaagagcttcgaagttgtcctttaaagggttacaactttttttattgggttgggaagcaatctggttat |
43422372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 43440979 - 43441025
Alignment:
| Q |
1 |
tttggattgttcatagggctatgaaggaaaaagggttctatttagat |
47 |
Q |
| |
|
|||||||||||| || |||||||| ||| |||||||||||||||||| |
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| T |
43440979 |
tttggattgttcttaaggctatgatggataaagggttctatttagat |
43441025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 216 - 356
Target Start/End: Complemental strand, 40186487 - 40186344
Alignment:
| Q |
216 |
gatgataaggttgagaatgaactggagaaggttaaaattcagc---tttcggataatttcgtgattagggtcatgaaagagcttcgagatggtcctttaa |
312 |
Q |
| |
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|||||||||||||||||| |||| | || |||| |||||| | || | ||| |||| ||||| ||||| || ||| ||||| | || ||||||||| |
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| T |
40186487 |
gatgataaggttgagaatcaacttgcaaatgttagaattcaacaacttactgatgattttgtgataagggttttggaagggcttcaaaatcgtcctttaa |
40186388 |
T |
|
| Q |
313 |
aggcttataagttttttcattgggttgggaagcaatctagttat |
356 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
40186387 |
aggcttacaagttttttcattgggttgggaagcaatctggttat |
40186344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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