View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11907_high_15 (Length: 351)
Name: NF11907_high_15
Description: NF11907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11907_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 24 - 341
Target Start/End: Original strand, 28243129 - 28243445
Alignment:
| Q |
24 |
ttaacctttgttcctgaaaaggtcaatcattaggaataccaggatctttctcaaccttcttcttattacttaattttgaaagggtgcgctacatcatgat |
123 |
Q |
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| T |
28243129 |
ttaacctttgttcctgaaaaggtcaatcattaggaataccaggatctttctcaaccttcttcttattacttaattttgaaagggtgcgctacatcatgat |
28243228 |
T |
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| Q |
124 |
aaaaacaaacgcagatcttgtcaatgacgagcaaatattttttctaggcactctattatatatgttttctccaaatcaatgaaaattaagtgcaattgct |
223 |
Q |
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| T |
28243229 |
aaaaacaaacgcagatcttatcaatgacgagccaatattttttctaggcactctat--tatatgttttctacaaatcaatgaaaattaagtgcaattgct |
28243326 |
T |
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| Q |
224 |
ttttatctgttgatatatctcttgcacatgttgtagtaaatagatttcttccatggtcgactt-ccgacataaaattaaattgattattaataacttgag |
322 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||| |
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| T |
28243327 |
ttttatctgttgatatatctcttgcacacattgtagtaaatagatttcttccatggtcgacttcccaacataaaattaaattgattattagtaacttgag |
28243426 |
T |
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| Q |
323 |
tctcttttcttaatctctg |
341 |
Q |
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| T |
28243427 |
tctcttttcttaatctctg |
28243445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 18178262 - 18178328
Alignment:
| Q |
32 |
tgttcctgaaaaggtcaatcattaggaataccaggatctttctcaaccttcttcttattacttaatt |
98 |
Q |
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| T |
18178262 |
tgttccttaaaaggccaatcatttggaataccaggatctttctcaaccttcttcttaccacttaatt |
18178328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 20369077 - 20369011
Alignment:
| Q |
32 |
tgttcctgaaaaggtcaatcattaggaataccaggatctttctcaaccttcttcttattacttaatt |
98 |
Q |
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| T |
20369077 |
tgttccttgaaaggccaatcatttggaatgccaggatctttctcaaccttcctcttaccacttaatt |
20369011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 218
Target Start/End: Original strand, 36870379 - 36870407
Alignment:
| Q |
190 |
ttctccaaatcaatgaaaattaagtgcaa |
218 |
Q |
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| T |
36870379 |
ttctccaaatcaatgaaaattaagtgcaa |
36870407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 183 - 230
Target Start/End: Complemental strand, 6464995 - 6464948
Alignment:
| Q |
183 |
atatgttttctccaaatcaatgaaaattaagtgcaattgctttttatc |
230 |
Q |
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| T |
6464995 |
atatgtcttatccaaatcaatgaaaattaagtgcaatttttttttatc |
6464948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 343
Target Start/End: Complemental strand, 52798610 - 52798557
Alignment:
| Q |
290 |
acataaaattaaattgattattaataacttgagtctcttttcttaatctctgct |
343 |
Q |
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||||||||| |||||| || | |||||||||||||| |||||||| |||||||| |
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| T |
52798610 |
acataaaatcaaattggttttcaataacttgagtctattttcttagtctctgct |
52798557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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