View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11907_high_22 (Length: 250)
Name: NF11907_high_22
Description: NF11907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11907_high_22 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 45043505 - 45043282
Alignment:
| Q |
18 |
acctgcaccatctggaaatgtggtacctagctataatcatattcaatatcaatctgacccttacccatccaatggtattttagcactgcctccaccatct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45043505 |
acctgcaccatctggaaatgtggtacctagctataatcatattcaatatcaatctgacccttacccatccaatggtattttagcactgcctccaccatct |
45043406 |
T |
|
| Q |
118 |
gcatcagaacaattgcaacatcaacaactccaacactacaatgatacaaataacaattgtgttattatgtgaccaattgattagtataagttttacatta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45043405 |
gcatcagaacaattgcaacatcaacaactccaacactacaatgatacaaataacaattgtgttattatgtgaccaattgattagtataagttttacatta |
45043306 |
T |
|
| Q |
218 |
tagtttatctgaacctttgcttct |
241 |
Q |
| |
|
|||||||||||||| |||| |||| |
|
|
| T |
45043305 |
tagtttatctgaacttttggttct |
45043282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 98 - 239
Target Start/End: Complemental strand, 45039907 - 45039767
Alignment:
| Q |
98 |
tagcactgcctccaccatctgcatcagaacaattgcaacatcaacaactccaacactacaatgatacaaataacaattgtgttattatgtgaccaattga |
197 |
Q |
| |
|
||||||| ||||||||||| ||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
45039907 |
tagcacttcctccaccatcagcaccagaacaattggaacatcagcaactccaacactacaatgatacaaataacaattgcgttaatatgtgaccaattg- |
45039809 |
T |
|
| Q |
198 |
ttagtataagttttacattatagtttatctgaacctttgctt |
239 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
45039808 |
ttggtataagttttacattatagcttatctgaatttttgctt |
45039767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 45043580 - 45043492
Alignment:
| Q |
30 |
tggaaatgtggtacctagctataatcatattcaatatcaatctgacccttacccatccaatggtattttagcactgcctccaccatctg |
118 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||||||||| ||||| |||||| | | |||| ||||| ||| ||||||||| |
|
|
| T |
45043580 |
tggaaatgtggtacctagctataaccgtattcaatatcaatctgaccgttaccgatccaacgatgttttcgcactacctgcaccatctg |
45043492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 45047347 - 45047265
Alignment:
| Q |
158 |
atgatacaaataacaattgtgttattatgtgaccaattgattagtataagtt-ttacattatagtttatctgaacctttgctt |
239 |
Q |
| |
|
||||||||||||||| ||||||||| ||||| ||||| ||||| ||||||| | |||||||||||||| |||| ||||||| |
|
|
| T |
45047347 |
atgatacaaataacagatgtgttattttgtgatcaattaattagaataagttataacattatagtttatttgaatatttgctt |
45047265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 30 - 162
Target Start/End: Original strand, 38346283 - 38346415
Alignment:
| Q |
30 |
tggaaatgtggtacctagctataatcatattcaatatcaatctgacccttacccatccaatggtattttagcactgcctccaccatctgcatcagaacaa |
129 |
Q |
| |
|
|||||||||||||||| ||| ||||||| |||| ||| ||||| ||||||| || ||||||| ||||||||| | | |||||||||| ||||||||| |
|
|
| T |
38346283 |
tggaaatgtggtaccttactacaatcataatcaaagtcattctgatccttaccaatacaatggtgttttagcaccacatgcaccatctgcttcagaacaa |
38346382 |
T |
|
| Q |
130 |
ttgcaacatcaacaactccaacactacaatgat |
162 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| |
|
|
| T |
38346383 |
atgcaacatcaacaaatccaacactactatgat |
38346415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University