View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11907_high_29 (Length: 239)

Name: NF11907_high_29
Description: NF11907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11907_high_29
NF11907_high_29
[»] chr2 (4 HSPs)
chr2 (1-203)||(28670976-28671182)
chr2 (1-166)||(28675120-28675282)
chr2 (1-116)||(28651254-28651369)
chr2 (1-116)||(28642393-28642508)


Alignment Details
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 28670976 - 28671182
Alignment:
Q  1 ttcagaatagaacatacgtggaacttttgttactccattttctatgagtccttggacaccaacctttgactcatcaaatttctttatttcactttttctg 100  Q
    |||| |||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28670976 ttcacaatagaacatgcgtggaacttttgttactccattttctgtaagtccttggacaccaacctttgactcatcaaatttctttagttcactttttctg 28671075  T
Q  101 tcataaatttgagcattcccttctaaatcatcactcgtgattgtggccatcttgttttgag---cttatctttgcattaattttgtaatgaa-aaaagtt 196  Q
    ||||||||| ||| ||| ||| ||| ||||| ||| ||||||||||||||| ||||||| |    |||||||||||||||||||||||| ||  ||||||    
T  28671076 tcataaattggagaatttcctgctacatcattacttgtgattgtggccatcatgttttgtggtaattatctttgcattaattttgtaatcaaggaaagtt 28671175  T
Q  197 tgattgg 203  Q
    |||||||    
T  28671176 tgattgg 28671182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 28675120 - 28675282
Alignment:
Q  1 ttcagaatagaacatacgtggaacttttgttactccattttctatgagtccttggacaccaacctttgactcatcaaatttctttatttcactttttctg 100  Q
    |||| ||| ||||||||||||||||||||| || ||||||||||  |||||||||||||||||||||||||||||||| || |||| |||||||||||||    
T  28675120 ttcacaatggaacatacgtggaacttttgtgacaccattttctacaagtccttggacaccaacctttgactcatcaaagttttttagttcactttttctg 28675219  T
Q  101 tcataaatttgagcattcccttctaaatcatcactcgtgattgtggccatcttgttttgagcttat 166  Q
    ||||||||||||| ||||||| ||||   |||||| ||||||||||||||||||||||||| ||||    
T  28675220 tcataaatttgagaattccctgctaa---atcactagtgattgtggccatcttgttttgaggttat 28675282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 28651254 - 28651369
Alignment:
Q  1 ttcagaatagaacatacgtggaacttttgttactccattttctatgagtccttggacaccaacctttgactcatcaaatttctttatttcactttttctg 100  Q
    |||| |||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| | ||||| |||||||||| ||    
T  28651254 ttcacaatagaacatgcgtggaacttttgttactccattttctacaagtccttggacaccaacctttgactcatcaaactcctttagttcactttttttg 28651353  T
Q  101 tcataaatttgagcat 116  Q
    ||||||||| ||||||    
T  28651354 tcataaattggagcat 28651369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 28642393 - 28642508
Alignment:
Q  1 ttcagaatagaacatacgtggaacttttgttactccattttctatgagtccttggacaccaacctttgactcatcaaatttctttatttcactttttctg 100  Q
    |||| ||||||||||  |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| | ||||| |||||| ||| ||    
T  28642393 ttcacaatagaacatgtgtggaacttttgttactccattttctacaagtccttggacaccaacctttgactcatcaaactcctttagttcactctttttg 28642492  T
Q  101 tcataaatttgagcat 116  Q
    ||||||||| ||||||    
T  28642493 tcataaattggagcat 28642508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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