View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11907_high_4 (Length: 570)
Name: NF11907_high_4
Description: NF11907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11907_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 1 - 564
Target Start/End: Original strand, 41409966 - 41410535
Alignment:
| Q |
1 |
tattcatttggtcaaaattcaaactaggaacataaatgctttgatttttctttaattttggagcacgtgttttgaaattgactattctgtgtttgatcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41409966 |
tattcatttggtcaaaattcaaactaggaacataaatgctttgatttttctttaattttggagcacgtgttttgaaattgactattctgtgtttgatcat |
41410065 |
T |
|
| Q |
101 |
tcatcatctcatgcaatgcaatgtacccagaaaacatggtcaa-------tagggtgaactgaattcacgtgcgtcctatttgttaccttaaactaatga |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41410066 |
tcatcatctcatgcaatgcaatgtacccagaaaacatggtcaatactcaatagggtgaactgaattcacgtgcgtcctatttgttaccttaaactaatga |
41410165 |
T |
|
| Q |
194 |
tgactagttctgatatattaatgatttggttgagtttttacctccaatcgcaagatatctcccataatatattaagtcaaggcatgtctcaaaacaaacc |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41410166 |
tgactagttctgatatattaatgatttggttgagtttttacctccaatcgcaagatatctcccataatatattaagtcaaggcatgtcttaaaacaaacc |
41410265 |
T |
|
| Q |
294 |
ttgtcaagtttcactttctccacgtataccttcaggcttggttggtcaaagtcatggtttcaattttctttgaattttgttcagagatacgtatacaaaa |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41410266 |
ttgtcaagtttcactttctccacgtataccttcaggcttggttggtcaaagtcatggtttcaattttctttgaattttgttcagagatacgtatacaaaa |
41410365 |
T |
|
| Q |
394 |
acccttgcataaaagaaagacatatacgaaaacttaaggnnnnnnnntgacgagtgatgatgtaatagaagttaaattaaaattaatctgaannnnnnnn |
493 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
41410366 |
acccttgcataaaagaaagacatatacgaaaacttaaggaaaaaaaatgacgagtgatgatgtaatagaagttaaataaaaaataatctgattttttttt |
41410465 |
T |
|
| Q |
494 |
caactctctcataaaaagtcgagtcttccttcttcttgttcttttttattggcctcaagtcttcttctctc |
564 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41410466 |
caactctctcat-aaaagtcgaggcttccttcttcttgttcttttttattggcctcaagtcttcttctctc |
41410535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University